Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LRO55_RS16705 Genome accession   NZ_CP088954
Coordinates   3540162..3542390 (+) Length   742 a.a.
NCBI ID   WP_231764163.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3535162..3547390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS16680 (LRO55_16680) - 3536676..3537014 (-) 339 WP_045436904.1 tRNA-binding protein -
  LRO55_RS16685 (LRO55_16685) - 3537259..3537522 (+) 264 WP_003654645.1 DUF2798 domain-containing protein -
  LRO55_RS16690 (LRO55_16690) - 3537587..3537931 (-) 345 WP_003654643.1 hypothetical protein -
  LRO55_RS16695 (LRO55_16695) gspG 3538200..3538784 (-) 585 WP_231764161.1 type II secretion system major pseudopilin GspG -
  LRO55_RS16700 (LRO55_16700) gspF 3538808..3540013 (-) 1206 WP_231764162.1 type II secretion system inner membrane protein GspF -
  LRO55_RS16705 (LRO55_16705) priA 3540162..3542390 (+) 2229 WP_231764163.1 primosomal protein N' Machinery gene
  LRO55_RS16710 (LRO55_16710) - 3542467..3544311 (+) 1845 WP_231764164.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LRO55_RS16715 (LRO55_16715) hslO 3544476..3545351 (+) 876 WP_080026220.1 Hsp33 family molecular chaperone HslO -
  LRO55_RS16720 (LRO55_16720) - 3545490..3546101 (+) 612 WP_231764165.1 LysE family translocator -
  LRO55_RS16725 (LRO55_16725) - 3546247..3547203 (+) 957 WP_017391357.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84121.04 Da        Isoelectric Point: 8.6622

>NTDB_id=634173 LRO55_RS16705 WP_231764163.1 3540162..3542390(+) (priA) [Acinetobacter calcoaceticus strain ACa13]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGKFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPS
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPAPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=634173 LRO55_RS16705 WP_231764163.1 3540162..3542390(+) (priA) [Acinetobacter calcoaceticus strain ACa13]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCTATTTCATTTGGGCGACAAAACCTAA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAAATTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCAGCCATACTGCGTCAGGGCAAACCGATGGACGTTTTGTTCCATCTCTGGAAAATCACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCGGTGAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCCTCT
GGAACAACAGAGAACATTCTGAATTTAAGTGGCGTAGAAACTGCAACACTTAAAGCACTAGAAAAGAAAGGTTTGGTTGA
GTGTACGCTTGAACCACACGACTTTAGCCCTGCACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAGCATCAATACCAAGCATTTTTGCTAGATGGCTTAACGGGTAGCGGTAAA
ACTGAAGTTTATCTACACATCATGCATGAGGTGCTAAAACAGGGTAAACAAGTACTGGTTTTGGTGCCAGAAATTGGTTT
AACCCCTCAAACCATTTCGCGTTTTAAGTCTCGTTTTAATTGTGATATTGCACTGTTACATTCAGGCTTAAACGACTCCA
AACGTTTACAAGCATGGCAACAGGCACAGACCGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCCATCTATACACCG
CTGCCACGTTTAGGCTTAATCATTTTAGATGAAGAACATGATCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGGCACTTACAAAGCTGCCCTGTGATTTTAGGTTCGGCAACACCAAGTATCGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTTATTGAACAAATCAAACATACTTTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTTTGCATACCCAGCCTTATTCTTATTTACATTGCCACCACTGCGGAACCATT
CATCGCTTACCAGATCATTGCCCTGAGTGTCAGCAAAAGAGCTTAAAAACCCTAGGCGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCAGAGCATGACGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGCATTCATCAAAACAAGCCAACAATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTCCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCAGGGTTACTCAGCGTAGATATCCGTGCACCAGAACGTACTGCGCA
ATTGATTGTTCAAGTAGCCGGCCGTGCAGGCCGTGGTGAGCATAAAGGTCATGTTTATTTGCAAACATTAAGACCCGATC
ACCCACTCCTAACCACACTCATTGAAAAAGACTATCGCGCGGTTGCCAAACAAACATTGGCTGAACGTAAAGTTGCTTTG
CTACCGCCATATCGCTATGCAGTACTGATACGTGCAGAATCCAAAGATCGAGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCGCCGATGGAACGTAAAGCGG
GACGCTATCGTGCACACATGGTGATTTTATCTGCTGACCGTGCCCGTCTACATTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTTCATGCACCAAGGCAGCATCAACTCAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.687

100

0.957