Detailed information NTG0063417

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: F6Y15_RS06405
• Genome accession: NZ_AP020313
• Coordinates: 1257372..1258454 (-)
• Length: 360 a.a.
• NCBI ID: WP_001548033.1
• Uniprot ID: A0A0H2XJ41
• Organism: Staphylococcus aureus strain KUH140046
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1252372..1263454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6Y15_RS06385	-	1252981..1253085 (-)	105	WP_001790092.1	hypothetical protein	-
F6Y15_RS06390 (KUH140046_1185)	secA	1253127..1255658 (-)	2532	WP_115390836.1	preprotein translocase subunit SecA	-
F6Y15_RS06395 (KUH140046_1186)	hpf	1256072..1256644 (-)	573	WP_000617735.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
F6Y15_RS06400 (KUH140046_1187)	-	1256705..1257379 (-)	675	WP_001057965.1	ComF family protein	-
F6Y15_RS06405 (KUH140046_1188)	comFA	1257372..1258454 (-)	1083	WP_001548033.1	DEAD/DEAH box helicase	Machinery gene
F6Y15_RS06410 (KUH140046_1189)	fakB1	1258818..1259684 (-)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
F6Y15_RS06415 (KUH140046_1190)	-	1259828..1260469 (+)	642	WP_000192947.1	YigZ family protein	-
F6Y15_RS06420 (KUH140046_1191)	-	1260639..1261694 (-)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
F6Y15_RS06425 (KUH140046_1192)	gdpS	1262012..1263082 (+)	1071	WP_000460983.1	GGDEF domain-containing protein GdpS	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42111.65 Da
• Isoelectric Point: 9.8307

>NTDB_id=63417 F6Y15_RS06405 WP_001548033.1 1257372..1258454(-) (comFA) [Staphylococcus aureus strain KUH140046]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=63417 F6Y15_RS06405 WP_001548033.1 1257372..1258454(-) (comFA) [Staphylococcus aureus strain KUH140046]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

3D structure

• AlphaFold DB: A0A0H2XJ41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367