Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LRO55_RS02365 Genome accession   NZ_CP088954
Coordinates   482361..483245 (+) Length   294 a.a.
NCBI ID   WP_231764552.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477361..488245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS02340 (LRO55_02340) - 477667..478914 (-) 1248 WP_005038511.1 YihY family inner membrane protein -
  LRO55_RS02345 (LRO55_02345) wrbA 479277..479885 (+) 609 WP_231764551.1 NAD(P)H:quinone oxidoreductase -
  LRO55_RS02350 (LRO55_02350) - 479938..480513 (-) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  LRO55_RS02355 (LRO55_02355) - 480585..481298 (-) 714 WP_003653602.1 DUF3108 domain-containing protein -
  LRO55_RS02360 (LRO55_02360) - 481457..482128 (-) 672 WP_005038515.1 hypothetical protein -
  LRO55_RS02365 (LRO55_02365) tonB2 482361..483245 (+) 885 WP_231764552.1 energy transducer TonB Machinery gene
  LRO55_RS02370 (LRO55_02370) ybeY 483347..483829 (-) 483 WP_231764553.1 rRNA maturation RNase YbeY -
  LRO55_RS02375 (LRO55_02375) - 483839..484927 (-) 1089 WP_017388325.1 PhoH family protein -
  LRO55_RS02380 (LRO55_02380) miaB 484965..486416 (-) 1452 WP_133747487.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33592.10 Da        Isoelectric Point: 8.4206

>NTDB_id=634154 LRO55_RS02365 WP_231764552.1 482361..483245(+) (tonB2) [Acinetobacter calcoaceticus strain ACa13]
MLNKRSLSIEPFYHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FHEVHRTSSDTPNPMSNDASTGDAQLETLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGVQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNTQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=634154 LRO55_RS02365 WP_231764552.1 482361..483245(+) (tonB2) [Acinetobacter calcoaceticus strain ACa13]
ATGTTGAATAAAAGAAGTCTATCCATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCGACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCGATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAACCAGTGCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCAGGCGCA
TTTCATGAGGTCCACCGTACCTCTAGTGATACTCCAAATCCCATGTCTAATGATGCTTCAACTGGAGATGCGCAGTTAGA
AACTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGCCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGT
CTCGAAGCACAATATTTACAACGTAGACAAGATTTCAGCCGTCAGCAAAAAATAAAAACAGTAGATGGAGTTCAGGCGAA
AAAAGATGCCTCGGCTGCTTATCTAGATAAATTCCGTGAGAAAGTGGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAACTTCAACAGTTGAAAGGCGAAGTCCGTTTAATGGTTATTTTAAATACACAAGGAGGGATTCGTGCAATTCGGTTG
CTTGAGAGCTCAGGGCATTCGGTATTGGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TACCAATATGAAAGATATTTCTGAATTGCGTATTGTACGTACTTGGCGTTTCGATCCTGCTCAAGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881