Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LRO55_RS01635 Genome accession   NZ_CP088954
Coordinates   345083..345529 (+) Length   148 a.a.
NCBI ID   WP_231764494.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340083..350529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01605 (LRO55_01605) - 340543..342648 (-) 2106 WP_005038306.1 RelA/SpoT family protein -
  LRO55_RS01610 (LRO55_01610) - 342688..342777 (-) 90 Protein_308 hypothetical protein -
  LRO55_RS01615 (LRO55_01615) rpoZ 342858..343136 (-) 279 WP_231764493.1 DNA-directed RNA polymerase subunit omega -
  LRO55_RS01620 (LRO55_01620) gmk 343209..343838 (-) 630 WP_003653783.1 guanylate kinase -
  LRO55_RS01625 (LRO55_01625) ispH 343961..344911 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRO55_RS01630 (LRO55_01630) - 344877..345177 (-) 301 Protein_312 hypothetical protein -
  LRO55_RS01635 (LRO55_01635) fimU 345083..345529 (+) 447 WP_231764494.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LRO55_RS01640 (LRO55_01640) pilV 345526..346047 (+) 522 WP_231764495.1 type IV pilus modification protein PilV -
  LRO55_RS01645 (LRO55_01645) - 346049..347077 (+) 1029 WP_231764496.1 PilW family protein -
  LRO55_RS01650 (LRO55_01650) - 347077..347823 (+) 747 WP_231764497.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15943.31 Da        Isoelectric Point: 8.5206

>NTDB_id=634149 LRO55_RS01635 WP_231764494.1 345083..345529(+) (fimU) [Acinetobacter calcoaceticus strain ACa13]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPSFTQLMAKQRLNANTRELISTLSQGRSQAVLLRTNVTVHLVDGTNTNTD
FYWEPTSGNRVTAPTSISSITFGRDGALVLGISADTDFVICNSTAKTQKSFALTRMGTVYSKNDGTCS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=634149 LRO55_RS01635 WP_231764494.1 345083..345529(+) (fimU) [Acinetobacter calcoaceticus strain ACa13]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTAATGGCTATTATCGCAAT
GATGGCTGCGCCGTCTTTTACTCAACTCATGGCAAAACAAAGATTAAATGCGAATACGAGAGAGTTGATCTCAACCTTAT
CTCAAGGACGTAGCCAAGCTGTTTTATTAAGAACAAATGTTACCGTTCATTTAGTTGATGGAACGAATACAAATACAGAT
TTTTATTGGGAACCCACTTCAGGAAATCGAGTAACTGCTCCAACATCGATAAGTAGTATTACTTTTGGTAGAGATGGAGC
GCTAGTTTTAGGTATTTCTGCTGACACGGATTTTGTAATTTGTAACTCAACAGCTAAAACTCAAAAATCCTTTGCGTTAA
CTCGGATGGGAACTGTTTATTCAAAAAACGACGGAACTTGCTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

47.468

100

0.507