Detailed information NTG0634121

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA6_RS21190
• Genome accession: NZ_CP104867
• Coordinates: 4535954..4536958 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4530954..4541958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA6_RS21175 (PALA6_04232)	-	4531442..4532449 (+)	1008	WP_003098486.1	TolB family protein	-
PALA6_RS21180 (PALA6_04233)	mutS	4532575..4535142 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA6_RS21185 (PALA6_04234)	fdxA	4535209..4535532 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PALA6_RS21190 (PALA6_04235)	rpoS	4535954..4536958 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA6_RS21195 (PALA6_04236)	-	4537063..4537956 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA6_RS21200 (PALA6_04237)	-	4538002..4538637 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA6_RS21205 (PALA6_04238)	surE	4538670..4539419 (-)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
PALA6_RS21210 (PALA6_04239)	truD	4539407..4540474 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PALA6_RS21215 (PALA6_04240)	ispF	4540471..4540944 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA6_RS21220 (PALA6_04241)	fghA	4541015..4541866 (-)	852	WP_004345459.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=634121 PALA6_RS21190 WP_003113871.1 4535954..4536958(-) (rpoS) [Pseudomonas aeruginosa strain PALA6]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=634121 PALA6_RS21190 WP_003113871.1 4535954..4536958(-) (rpoS) [Pseudomonas aeruginosa strain PALA6]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653