Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LSQ66_RS17840 Genome accession   NZ_CP088952
Coordinates   3897869..3898270 (-) Length   133 a.a.
NCBI ID   WP_231766532.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3892869..3903270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS17825 (LSQ66_17825) - 3894641..3896902 (-) 2262 WP_231766530.1 methyl-accepting chemotaxis protein -
  LSQ66_RS17830 (LSQ66_17830) - 3896933..3897490 (-) 558 WP_231766531.1 chemotaxis protein CheW -
  LSQ66_RS17835 (LSQ66_17835) - 3897494..3897859 (-) 366 WP_269449098.1 PleD family two-component system response regulator -
  LSQ66_RS17840 (LSQ66_17840) pilG 3897869..3898270 (-) 402 WP_231766532.1 PleD family two-component system response regulator Regulator
  LSQ66_RS17845 (LSQ66_17845) - 3898354..3898506 (-) 153 WP_231770144.1 rubredoxin -
  LSQ66_RS17850 (LSQ66_17850) - 3898599..3899426 (+) 828 WP_231766533.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  LSQ66_RS17855 (LSQ66_17855) hemL 3899436..3900722 (+) 1287 WP_231766534.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LSQ66_RS17860 (LSQ66_17860) - 3900905..3902173 (+) 1269 WP_231766535.1 NRAMP family divalent metal transporter -
  LSQ66_RS17865 (LSQ66_17865) - 3902324..3902716 (+) 393 WP_231766536.1 cbb3-type cytochrome c oxidase subunit I -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14298.52 Da        Isoelectric Point: 7.3213

>NTDB_id=634108 LSQ66_RS17840 WP_231766532.1 3897869..3898270(-) (pilG) [Massilia endophytica strain DM-R-R2A-13]
MTTTPQAPGLKIMVIDDSSTIRRSAEIFLTQAGYQVLLAEDGFDALAKINDHHPDLVFCDILMPRLDGYQTCALIKKSAK
FHATPVLMLSSKDGLFDRARGAMVGSSAYLTKPFTKDSLLAAVREHTGAAAGA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=634108 LSQ66_RS17840 WP_231766532.1 3897869..3898270(-) (pilG) [Massilia endophytica strain DM-R-R2A-13]
ATGACGACTACGCCGCAAGCGCCCGGTTTGAAGATCATGGTGATCGACGATAGCAGCACCATCCGCCGCTCCGCCGAGAT
TTTCCTCACCCAGGCCGGCTACCAGGTGCTGCTGGCCGAAGACGGCTTCGACGCCCTGGCCAAGATCAACGACCATCACC
CGGATCTCGTGTTCTGCGACATCCTCATGCCGCGCCTGGACGGCTACCAGACCTGCGCCCTGATCAAGAAGAGCGCGAAA
TTCCATGCCACGCCCGTGCTCATGCTCTCCTCCAAGGACGGCCTGTTCGACCGCGCGCGCGGCGCCATGGTGGGCTCCTC
GGCCTACCTCACCAAACCCTTTACCAAAGACAGCCTGCTGGCGGCCGTGCGCGAGCATACCGGCGCCGCGGCGGGCGCAT
AG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.81

90.977

0.571