Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LSQ66_RS06235 Genome accession   NZ_CP088952
Coordinates   1355522..1356898 (+) Length   458 a.a.
NCBI ID   WP_231768929.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1350522..1361898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS06210 (LSQ66_06210) rimI 1350605..1351075 (+) 471 WP_231768924.1 ribosomal protein S18-alanine N-acetyltransferase -
  LSQ66_RS06215 (LSQ66_06215) - 1351081..1352091 (+) 1011 WP_231768925.1 uracil-DNA glycosylase -
  LSQ66_RS06220 (LSQ66_06220) - 1352075..1353043 (+) 969 WP_231768926.1 DUF1853 family protein -
  LSQ66_RS06225 (LSQ66_06225) lplT 1353040..1354302 (-) 1263 WP_231768927.1 lysophospholipid transporter LplT -
  LSQ66_RS06230 (LSQ66_06230) alr 1354432..1355520 (+) 1089 WP_231768928.1 alanine racemase -
  LSQ66_RS06235 (LSQ66_06235) radA 1355522..1356898 (+) 1377 WP_231768929.1 DNA repair protein RadA Machinery gene
  LSQ66_RS06240 (LSQ66_06240) - 1356987..1357307 (+) 321 WP_269449149.1 PilZ domain-containing protein -
  LSQ66_RS06245 (LSQ66_06245) fliD 1357380..1358705 (+) 1326 WP_231768931.1 flagellar filament capping protein FliD -
  LSQ66_RS06250 (LSQ66_06250) sixA 1358954..1359421 (-) 468 WP_231768932.1 phosphohistidine phosphatase SixA -
  LSQ66_RS06255 (LSQ66_06255) ppk1 1359440..1361536 (-) 2097 WP_231768933.1 polyphosphate kinase 1 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48907.34 Da        Isoelectric Point: 7.4347

>NTDB_id=634102 LSQ66_RS06235 WP_231768929.1 1355522..1356898(+) (radA) [Massilia endophytica strain DM-R-R2A-13]
MAKAKTQYTCSECGGTSSKWTGQCSSCQQWNTMVETVIESAGANRFSQSQHQSLAQTAPVLSLSDIEAMDVPRFGTGIEE
FDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANMSQMKSVLYVSGEESGAQIALRAKRLAIDARELKLQAEIQLEKIL
NTLAELKPQVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKQSGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHL
PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKALPRGFVVFGEVGLA
GEIRPAPRGQERLREAAKLGFSIAMIPKANAPKQPIEGMTIIAVDRIDDAFTRLREFH

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=634102 LSQ66_RS06235 WP_231768929.1 1355522..1356898(+) (radA) [Massilia endophytica strain DM-R-R2A-13]
ATGGCCAAGGCCAAGACTCAATATACGTGCAGCGAATGCGGCGGCACCAGCAGCAAATGGACCGGCCAATGTTCCTCCTG
CCAGCAATGGAACACCATGGTGGAGACGGTGATCGAGAGCGCGGGCGCGAACCGCTTCTCGCAGAGCCAGCACCAGTCGC
TGGCGCAGACGGCGCCCGTACTGTCCCTGAGCGATATCGAGGCGATGGATGTGCCGCGCTTCGGCACCGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCCAC
GCTGCTGCTGCAGGCGCTGGCCAATATGTCGCAGATGAAGAGCGTGCTGTATGTGAGCGGCGAGGAGTCCGGCGCCCAGA
TCGCGCTGCGCGCCAAGCGCCTGGCCATCGACGCCCGCGAGCTGAAGCTCCAGGCGGAAATCCAGCTCGAAAAAATCCTC
AACACCCTGGCCGAGCTGAAGCCGCAGGTGGCGGTAATCGACTCGATCCAGACCCTGTACTCGGATGCGCTGACTTCCGC
CCCCGGTTCCGTGGCCCAGGTGCGCGAATGCGCCGCCCAGCTCACGCGTGTGGCCAAGCAGAGCGGCGTCACTATCATCC
TGGTAGGCCATGTGACGAAAGAGGGCGCTCTGGCGGGACCGCGCGTGCTGGAGCACATCGTGGATACCGTGCTCTATTTC
GAAGGCGACAGCCATTCCAGCTTCCGCCTCGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTGAACGAGCTGGGCGTGTT
CGCGATGACGGAGAAGGGCCTGAAGGGCGTGTCGAATCCCTCGGCGCTCTTCCTGTCCCAGCACGACAACCAGGTGCCCG
GCTCCTGCGTGATGGTGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCACTGGTGGACGCGAGCCACCTG
CCCAATGCGCGCCGCCTTTCGGTGGGCCTGGAGCAGAACCGGCTTGCCATGCTGCTGGCCGTGCTGCACCGGCACGCTGG
CATTGCGGCTTTCGACCAGGACGTGTTCATCAACGCCGTGGGCGGGGTGAAGATTACGGAACCGGCCGCCGACCTCGCCG
TCTTGCTCGCTATCAACTCGTCGATGCGCAACAAGGCGCTGCCGCGCGGTTTCGTGGTCTTCGGCGAAGTGGGCCTGGCC
GGTGAAATCCGGCCCGCGCCGCGCGGCCAGGAGCGGCTGCGCGAAGCGGCCAAACTGGGCTTCTCCATTGCCATGATTCC
GAAGGCGAATGCACCAAAACAGCCCATCGAGGGCATGACGATTATTGCCGTCGACCGCATCGACGATGCATTTACGCGAC
TGCGCGAATTTCACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

100

0.491
  radA Streptococcus mitis SK321

46.389

99.782

0.463
  radA Streptococcus mitis NCTC 12261

46.272

99.563

0.461
  radA Streptococcus pneumoniae TIGR4

47.511

96.507

0.459
  radA Streptococcus pneumoniae Rx1

47.511

96.507

0.459
  radA Streptococcus pneumoniae D39

47.511

96.507

0.459
  radA Streptococcus pneumoniae R6

47.511

96.507

0.459