Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSQ66_RS01510 Genome accession   NZ_CP088952
Coordinates   306987..308021 (-) Length   344 a.a.
NCBI ID   WP_231768058.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301987..313021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS01490 (LSQ66_01490) - 303643..304086 (-) 444 WP_231768054.1 hypothetical protein -
  LSQ66_RS01495 (LSQ66_01495) rpoH 304211..305104 (-) 894 WP_407659618.1 RNA polymerase sigma factor RpoH -
  LSQ66_RS01500 (LSQ66_01500) ftsX 305405..306319 (-) 915 WP_231768056.1 permease-like cell division protein FtsX -
  LSQ66_RS01505 (LSQ66_01505) - 306316..306981 (-) 666 WP_231768057.1 cell division ATP-binding protein FtsE -
  LSQ66_RS01510 (LSQ66_01510) pilA 306987..308021 (-) 1035 WP_231768058.1 signal recognition particle-docking protein FtsY Machinery gene
  LSQ66_RS01515 (LSQ66_01515) - 308125..309099 (-) 975 WP_231768059.1 MerR family transcriptional regulator -
  LSQ66_RS01520 (LSQ66_01520) - 309722..310801 (+) 1080 WP_231768060.1 porin -
  LSQ66_RS01525 (LSQ66_01525) - 310875..311456 (+) 582 WP_231768061.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36591.53 Da        Isoelectric Point: 7.0804

>NTDB_id=634098 LSQ66_RS01510 WP_231768058.1 306987..308021(-) (pilA) [Massilia endophytica strain DM-R-R2A-13]
MFSFFKKKTAASEVPAPAPAEAPAPGPAESAAPLAFDMETAPRPETKQSWMGRLKAGLSKTSANLSILFVGAKIDEALYE
ELEAALLMADAGIDATQYLLDALKRKVKEDKLLDAAAVKAALKELMTELLLPLQKPFELGRHQPLVMMISGVNGAGKTTT
IGKLAKHMQAHHQSVLLAAGDTFRAAAREQLMVWGQRNNVTVIAQESGDPAAVSFDAVQSGKARGTNVVMIDTAGRLPTQ
LHLMEELKKIKRVIGKGMEGAPHETLLVIDGNTGQNALAQVKAFDDALQLSGLIITKLDGTAKGGVLAAIARVRPVPVYF
IGIGEKIEDLQPFNAAEFVEALLG

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=634098 LSQ66_RS01510 WP_231768058.1 306987..308021(-) (pilA) [Massilia endophytica strain DM-R-R2A-13]
ATGTTCAGCTTCTTCAAGAAAAAAACTGCCGCCTCTGAAGTGCCGGCGCCCGCTCCTGCGGAAGCTCCGGCGCCTGGGCC
TGCCGAGTCCGCCGCTCCGCTCGCCTTCGACATGGAAACGGCGCCCCGGCCGGAAACGAAGCAGTCCTGGATGGGCCGCC
TGAAGGCGGGGCTGTCGAAAACCTCCGCCAATCTCTCCATCCTCTTCGTGGGCGCCAAGATCGACGAGGCGCTGTACGAA
GAGCTGGAAGCGGCCCTGCTCATGGCGGACGCGGGTATCGATGCCACCCAGTACCTGCTCGACGCGCTCAAGCGCAAGGT
GAAGGAAGACAAGCTGCTGGACGCCGCCGCCGTGAAGGCCGCCCTCAAGGAGCTGATGACCGAACTGCTGCTGCCGCTGC
AGAAGCCTTTCGAGCTGGGCCGCCACCAGCCCCTCGTGATGATGATTTCCGGCGTGAACGGCGCGGGCAAGACCACCACC
ATCGGCAAGTTGGCCAAGCACATGCAGGCCCACCACCAGTCCGTGCTGCTGGCTGCGGGCGACACCTTCCGCGCCGCCGC
CCGCGAGCAGCTCATGGTCTGGGGCCAGCGCAACAATGTGACGGTAATCGCCCAGGAATCGGGCGACCCTGCCGCCGTGT
CCTTCGATGCCGTGCAGTCTGGCAAGGCGCGCGGCACGAATGTGGTCATGATCGATACCGCCGGCCGCCTGCCCACCCAG
CTGCACCTCATGGAGGAGCTGAAGAAGATCAAGCGCGTGATCGGCAAGGGCATGGAAGGCGCGCCGCACGAGACGCTGCT
CGTCATCGACGGCAACACGGGCCAGAACGCGCTGGCCCAGGTGAAGGCTTTCGACGACGCGCTCCAGCTTTCCGGCCTCA
TCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGCCATTGCCCGCGTGCGCCCCGTGCCCGTCTATTTC
ATCGGCATCGGCGAGAAGATCGAAGACCTGCAGCCCTTCAATGCGGCTGAGTTTGTCGAAGCCCTGCTCGGTTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(71-124)

SRP54-type protein, GTPase domain (SRP54)

(145-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

59.416

89.535

0.532