Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PALA6_RS05055 Genome accession   NZ_CP104867
Coordinates   1061364..1062857 (-) Length   497 a.a.
NCBI ID   WP_269975451.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056364..1067857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA6_RS05020 (PALA6_00998) - 1057215..1057664 (+) 450 WP_003094369.1 hypothetical protein -
  PALA6_RS05025 (PALA6_00999) - 1057677..1058288 (+) 612 WP_003098862.1 superoxide dismutase -
  PALA6_RS05030 (PALA6_01000) - 1058307..1059239 (+) 933 WP_003120918.1 ZIP family metal transporter -
  PALA6_RS05035 (PALA6_01001) - 1059336..1059608 (-) 273 WP_003116217.1 HPr family phosphocarrier protein -
  PALA6_RS05040 (PALA6_01002) rapZ 1059638..1060498 (-) 861 WP_004348002.1 RNase adapter RapZ -
  PALA6_RS05045 (PALA6_01003) ptsN 1060500..1060964 (-) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PALA6_RS05050 (PALA6_01004) hpf 1060978..1061286 (-) 309 WP_003094359.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PALA6_RS05055 (PALA6_01005) rpoN/rpoN1 1061364..1062857 (-) 1494 WP_269975451.1 RNA polymerase factor sigma-54 Machinery gene
  PALA6_RS05060 (PALA6_01006) lptB 1063083..1063808 (-) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  PALA6_RS05065 (PALA6_01007) lptA 1063808..1064335 (-) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  PALA6_RS05070 (PALA6_01008) lptC 1064322..1064894 (-) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  PALA6_RS05075 (PALA6_01009) - 1064903..1065442 (-) 540 WP_003098849.1 KdsC family phosphatase -
  PALA6_RS05080 (PALA6_01010) kdsD 1065442..1066422 (-) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  PALA6_RS05085 (PALA6_01012) - 1066836..1067645 (+) 810 WP_003094343.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55994.16 Da        Isoelectric Point: 4.4866

>NTDB_id=634077 PALA6_RS05055 WP_269975451.1 1061364..1062857(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain PALA6]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAREDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARRFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=634077 PALA6_RS05055 WP_269975451.1 1061364..1062857(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain PALA6]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCTCTCCAGGAA
AGCGCCACCCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CCGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGATAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CCGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGAGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCATGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCTGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.733

100

0.475