Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA6_RS01910 Genome accession   NZ_CP104867
Coordinates   416378..417742 (+) Length   454 a.a.
NCBI ID   WP_009875719.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411378..422742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA6_RS01890 (PALA6_00382) - 412215..412781 (-) 567 WP_003084491.1 hypothetical protein -
  PALA6_RS01895 (PALA6_00383) rsmD 412784..413380 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA6_RS01900 (PALA6_00384) - 413380..414867 (-) 1488 WP_003117890.1 M16 family metallopeptidase -
  PALA6_RS01905 (PALA6_00385) - 414860..416257 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA6_RS01910 (PALA6_00386) pilA 416378..417742 (+) 1365 WP_009875719.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA6_RS01915 (PALA6_00387) ftsE 417739..418410 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA6_RS01920 (PALA6_00388) ftsX 418410..419417 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA6_RS01925 (PALA6_00389) rpoH 419531..420385 (+) 855 WP_269975407.1 RNA polymerase sigma factor RpoH -
  PALA6_RS01930 (PALA6_00390) - 420450..421055 (+) 606 WP_004346634.1 hypothetical protein -
  PALA6_RS01935 (PALA6_00391) mtgA 421060..421791 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA6_RS01940 (PALA6_00392) - 421828..422205 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA6_RS01945 (PALA6_00393) thiS 422308..422508 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48324.73 Da        Isoelectric Point: 4.5272

>NTDB_id=634056 PALA6_RS01910 WP_009875719.1 416378..417742(+) (pilA) [Pseudomonas aeruginosa strain PALA6]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTS
ASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPL
QVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIF
DAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLAL
TKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=634056 PALA6_RS01910 WP_009875719.1 416378..417742(+) (pilA) [Pseudomonas aeruginosa strain PALA6]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGG
CCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGC
GCCAGCATTGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGAC
GCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGG
AGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTG
CAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAA
GCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGC
AGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTC
GACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAA
CCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGC
TCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTG
ACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGG
TGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACG
CATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(164-229)

SRP54-type protein, GTPase domain (SRP54)

(249-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.018

96.035

0.452