Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LRK53_RS07420 Genome accession   NZ_CP088923
Coordinates   1660831..1662216 (+) Length   461 a.a.
NCBI ID   WP_235642596.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655831..1667216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS07395 (LRK53_07395) - 1657140..1657466 (+) 327 WP_027492791.1 iron-sulfur cluster assembly accessory protein -
  LRK53_RS07400 (LRK53_07400) rpsF 1657751..1658173 (+) 423 WP_027492790.1 30S ribosomal protein S6 -
  LRK53_RS07405 (LRK53_07405) rpsR 1658188..1658418 (+) 231 WP_008434437.1 30S ribosomal protein S18 -
  LRK53_RS07410 (LRK53_07410) rplI 1658577..1659026 (+) 450 WP_027492789.1 50S ribosomal protein L9 -
  LRK53_RS07415 (LRK53_07415) - 1659326..1660720 (+) 1395 WP_027492788.1 replicative DNA helicase -
  LRK53_RS07420 (LRK53_07420) radA 1660831..1662216 (+) 1386 WP_235642596.1 DNA repair protein RadA Machinery gene
  LRK53_RS07425 (LRK53_07425) ccsA 1662249..1663049 (-) 801 WP_027492786.1 cytochrome c biogenesis protein CcsA -
  LRK53_RS07430 (LRK53_07430) ffh 1663146..1664525 (+) 1380 WP_027492785.1 signal recognition particle protein -
  LRK53_RS07435 (LRK53_07435) rpsP 1664779..1665033 (+) 255 WP_007510510.1 30S ribosomal protein S16 -
  LRK53_RS07440 (LRK53_07440) rimM 1665036..1665551 (+) 516 WP_027492784.1 ribosome maturation factor RimM -
  LRK53_RS07445 (LRK53_07445) trmD 1665571..1666344 (+) 774 WP_027492783.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LRK53_RS07450 (LRK53_07450) rplS 1666390..1666782 (+) 393 WP_027492782.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48429.73 Da        Isoelectric Point: 7.7218

>NTDB_id=634019 LRK53_RS07420 WP_235642596.1 1660831..1662216(+) (radA) [Rhodanobacter thiooxydans strain FW510-R12]
MAKAKTAYVCTDCGAEHPKWQGACAECGAWNTLSEIVLAPASAAKPSVGAQRSSYAGAAAGAPRITPLTAVALTTEARTL
TGIGELDRVLGGGLVQGSVVLIGGDPGIGKSTLLLQMLGTLGGQLPSVYVTGEESLAQVAARAQRLGLPLEPLQALAETC
IERILEQAAATRPRVLVVDSIQTIWTELLTAAPGSVSQVRESAAKLTRYAKETGTSVFLVGHVTKEGGIAGPRVLEHMVD
AVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGDKGLREVPNPSAIFLSTHAGPTPGSAVMVTREGTRPLLVEVQALV
DQSSLGNPRRVTLGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEHTIAFG
EVGLSGEIRPVPNGEERLKEAAHHGFRRAIVPKANAPKKGRVGEMEVVGVERLGEAIDACR

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=634019 LRK53_RS07420 WP_235642596.1 1660831..1662216(+) (radA) [Rhodanobacter thiooxydans strain FW510-R12]
ATGGCCAAGGCCAAGACCGCCTATGTCTGCACCGATTGCGGTGCCGAGCATCCGAAGTGGCAGGGCGCGTGCGCCGAGTG
CGGCGCGTGGAACACGCTCAGCGAGATCGTGCTGGCGCCGGCGTCGGCGGCGAAGCCGTCGGTGGGCGCGCAGCGTTCCA
GTTACGCCGGCGCCGCCGCGGGCGCGCCGCGTATCACGCCGCTGACCGCGGTGGCGCTGACCACCGAGGCCCGCACGCTG
ACCGGCATCGGTGAGCTGGACCGCGTGCTCGGCGGCGGCCTGGTGCAGGGCTCGGTGGTGCTGATCGGCGGCGATCCAGG
CATCGGCAAGTCGACCCTGCTGCTGCAGATGCTGGGCACGCTGGGCGGGCAACTGCCCAGCGTCTACGTCACCGGCGAGG
AGTCGCTGGCCCAGGTGGCGGCGCGGGCGCAGCGCCTGGGCCTGCCGCTGGAGCCGCTGCAGGCGCTGGCCGAGACCTGC
ATCGAACGCATCCTCGAACAGGCGGCGGCGACGCGGCCGCGGGTGCTGGTGGTCGACTCGATCCAGACCATCTGGACCGA
ACTGCTCACCGCCGCGCCCGGCTCGGTGTCGCAGGTACGCGAGTCGGCGGCCAAGCTCACCCGCTACGCCAAGGAAACCG
GCACCAGCGTGTTCCTGGTCGGCCACGTCACCAAGGAAGGCGGCATCGCCGGTCCGCGCGTGCTGGAGCACATGGTCGAC
GCGGTGCTGTATTTCGAGGGCGAATCCGGTTCGCGCTTCCGCGTGCTGCGCGCATTCAAGAACCGCTTCGGCGCGGTCAA
CGAGCTGGGCGTGTTCGCGATGGGCGACAAGGGCCTGCGCGAGGTGCCGAACCCGTCGGCGATCTTCCTGTCCACGCACG
CGGGCCCCACGCCGGGCAGCGCGGTGATGGTCACCCGCGAAGGCACCCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTG
GACCAGAGCTCGCTGGGCAACCCGCGCCGGGTCACCCTGGGCCTGGAACAGAACCGGCTGGCGATGCTGTTGGCGGTGCT
GCACCGGCACGGTGGCGTGGCGGCCTACGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACGG
CGGCCGACCTGCCGGTGCTGCTGGCGGTGCTGTCCAGCTTGCGCGACCGGCCGCTGCCGGAGCACACCATCGCCTTCGGC
GAAGTGGGCCTGTCCGGCGAGATCCGCCCGGTGCCGAACGGCGAGGAGCGCTTGAAGGAGGCCGCCCACCACGGTTTCCG
CCGCGCCATCGTGCCGAAGGCGAACGCACCGAAGAAAGGGCGCGTGGGCGAGATGGAAGTGGTCGGGGTGGAGCGGCTGG
GCGAGGCGATCGACGCCTGCCGCTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(81-156)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(351-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.472

99.349

0.482
  radA Streptococcus pneumoniae Rx1

44.201

99.132

0.438
  radA Streptococcus pneumoniae D39

44.201

99.132

0.438
  radA Streptococcus pneumoniae R6

44.201

99.132

0.438
  radA Streptococcus pneumoniae TIGR4

44.201

99.132

0.438
  radA Streptococcus mitis NCTC 12261

44.201

99.132

0.438
  radA Streptococcus mitis SK321

44.201

99.132

0.438