Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRK54_RS04195 Genome accession   NZ_CP088922
Coordinates   888908..889318 (-) Length   136 a.a.
NCBI ID   WP_274378359.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain FW104-10B01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 883908..894318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK54_RS04180 (LRK54_04180) - 885817..887847 (-) 2031 WP_007507043.1 methyl-accepting chemotaxis protein -
  LRK54_RS04185 (LRK54_04185) - 887978..888517 (-) 540 WP_007507045.1 chemotaxis protein CheW -
  LRK54_RS04190 (LRK54_04190) - 888514..888885 (-) 372 WP_007507047.1 response regulator -
  LRK54_RS04195 (LRK54_04195) pilG 888908..889318 (-) 411 WP_274378359.1 response regulator Regulator
  LRK54_RS04200 (LRK54_04200) gshB 889681..890658 (+) 978 WP_007507050.1 glutathione synthase -
  LRK54_RS04205 (LRK54_04205) - 890655..891524 (+) 870 WP_007507051.1 energy transducer TonB -
  LRK54_RS04210 (LRK54_04210) - 891577..892146 (+) 570 WP_027485856.1 YqgE/AlgH family protein -
  LRK54_RS04215 (LRK54_04215) ruvX 892143..892592 (+) 450 WP_015447001.1 Holliday junction resolvase RuvX -
  LRK54_RS04220 (LRK54_04220) - 892628..893554 (+) 927 WP_015447000.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15092.54 Da        Isoelectric Point: 7.8835

>NTDB_id=633987 LRK54_RS04195 WP_274378359.1 888908..889318(-) (pilG) [Rhodanobacter denitrificans strain FW104-10B01]
MNLNMSANELDGLKVMVIDDSKTIRRTAETLLKKEGCEVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=633987 LRK54_RS04195 WP_274378359.1 888908..889318(-) (pilG) [Rhodanobacter denitrificans strain FW104-10B01]
GTGAATTTGAACATGAGCGCTAACGAGTTGGACGGTCTGAAGGTCATGGTGATCGACGACTCGAAGACCATCCGCCGCAC
GGCGGAAACCCTGCTGAAAAAAGAGGGTTGCGAGGTGCTGACCGCCGTCGACGGCTTCGAGGCACTCGCCAAGATCTCCG
ACCAGAAGCCCGCCATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGCTACCAGACCTGCGCGCTGATCAAGAAC
AATCCGCAGTTTCGCGCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGCCGCATCGT
CGGCGCCGAGCAGTATCTGACCAAGCCGTTCACGCGGGACGAACTGCTTGGTGCCATCCATCGCCACGTCAGCACGGTAT
CGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

88.971

0.669