Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LRK44_RS11660 Genome accession   NZ_CP088921
Coordinates   2499116..2500153 (-) Length   345 a.a.
NCBI ID   WP_007507996.1    Uniprot ID   I4WYA7
Organism   Rhodanobacter denitrificans strain FW104-R3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2494116..2505153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK44_RS11645 (LRK44_11645) csrA 2495347..2495550 (-) 204 WP_007508001.1 carbon storage regulator CsrA -
  LRK44_RS11650 (LRK44_11650) alaS 2495820..2498462 (-) 2643 WP_027490120.1 alanine--tRNA ligase -
  LRK44_RS11655 (LRK44_11655) - 2498547..2499083 (-) 537 WP_015448234.1 regulatory protein RecX -
  LRK44_RS11660 (LRK44_11660) recA 2499116..2500153 (-) 1038 WP_007507996.1 recombinase RecA Machinery gene
  LRK44_RS11665 (LRK44_11665) - 2500291..2500800 (-) 510 WP_015448235.1 CinA family protein -
  LRK44_RS11670 (LRK44_11670) - 2501524..2502006 (-) 483 WP_007507992.1 hypothetical protein -
  LRK44_RS11675 (LRK44_11675) - 2502214..2502600 (-) 387 WP_007507990.1 hypothetical protein -
  LRK44_RS11680 (LRK44_11680) - 2502752..2503789 (-) 1038 WP_231378360.1 hypothetical protein -
  LRK44_RS11685 (LRK44_11685) - 2503878..2504264 (-) 387 WP_155950217.1 hypothetical protein -
  LRK44_RS11690 (LRK44_11690) - 2504355..2505116 (-) 762 WP_007507987.1 DUF4852 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37091.54 Da        Isoelectric Point: 5.5718

>NTDB_id=633975 LRK44_RS11660 WP_007507996.1 2499116..2500153(-) (recA) [Rhodanobacter denitrificans strain FW104-R3]
MDDNKRKALTSALGQIEKQFGKGAVMRMGDRVNEAIETISTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
SCQRAGGTAAFIDAEHALDPTYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEIIGSE
TRVKVVKNKVAPPFRQCEFEILYGEGTSREGEIIELGVAQNLIDKSGAWYSYNGDRIGQGKENVRQFLRDNPAIANEIDK
QLRERLLVPVGKPAPAAPEEALEEV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=633975 LRK44_RS11660 WP_007507996.1 2499116..2500153(-) (recA) [Rhodanobacter denitrificans strain FW104-R3]
ATGGATGACAACAAGCGCAAGGCGCTCACCTCCGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCGCGTCAACGAGGCGATCGAGACGATCTCCACCGGCTCGCTGGGGCTGGACATCGCGCTCGGCGTCGGCG
GCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCGTCCGGCAAGACCACCATGACGCTGCAGGCGATCGCC
AGCTGCCAGCGCGCCGGCGGCACCGCCGCATTCATCGACGCCGAGCATGCGCTCGATCCCACTTACGCCGAAAAGCTCGG
CGTCAAGGTCGACGACCTGCTGGTATCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTGGACATGGTGGTGGTCGACTCGGTGGCCGCGCTGACTCCGAAGGCCGAGATCGAGGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAATCCGGCTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGAGGAGATCATCGGTTCGGAA
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGTGCGAGTTCGAGATCCTGTACGGCGAGGGCAC
CTCGCGCGAGGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGCGCCTGGTACAGCTACAACG
GCGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCGATCGCCAACGAGATCGACAAG
CAGCTGCGCGAGCGCCTGCTGGTACCGGTCGGCAAGCCGGCCCCCGCCGCGCCGGAAGAGGCGCTCGAGGAAGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4WYA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.439

95.072

0.736
  recA Acinetobacter baylyi ADP1

73.837

99.71

0.736
  recA Ralstonia pseudosolanacearum GMI1000

72.434

98.841

0.716
  recA Acinetobacter baumannii D1279779

74.312

94.783

0.704
  recA Neisseria gonorrhoeae MS11

74.383

93.913

0.699
  recA Neisseria gonorrhoeae MS11

74.383

93.913

0.699
  recA Neisseria gonorrhoeae strain FA1090

74.383

93.913

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.644

95.362

0.693
  recA Vibrio cholerae strain A1552

72.644

95.362

0.693
  recA Glaesserella parasuis strain SC1401

70.062

93.913

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.055

94.783

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.942

0.623
  recA Helicobacter pylori strain NCTC11637

60.969

100

0.62
  recA Helicobacter pylori 26695

60.684

100

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

93.333

0.609
  recA Streptococcus mutans UA159

62.769

94.203

0.591
  recA Streptococcus pyogenes NZ131

61.28

95.072

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

93.043

0.577
  recA Streptococcus mitis SK321

57.681

100

0.577
  recA Streptococcus mitis NCTC 12261

60.991

93.623

0.571
  recA Streptococcus pneumoniae Rx1

60.429

94.493

0.571
  recA Streptococcus pneumoniae D39

60.429

94.493

0.571
  recA Streptococcus pneumoniae R6

60.429

94.493

0.571
  recA Streptococcus pneumoniae TIGR4

60.429

94.493

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.623

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

94.783

0.548