Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PALA4_RS08775 Genome accession   NZ_CP104866
Coordinates   1895150..1895479 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1890150..1900479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS08760 (PALA4_01733) - 1890265..1891287 (+) 1023 WP_043091148.1 MraY family glycosyltransferase -
  PALA4_RS31765 - 1891727..1891837 (+) 111 Protein_1744 hypothetical protein -
  PALA4_RS08770 (PALA4_01735) - 1893097..1894959 (+) 1863 WP_269973791.1 polysaccharide biosynthesis protein -
  PALA4_RS08775 (PALA4_01736) comEA/comE1 1895150..1895479 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PALA4_RS08785 (PALA4_01738) - 1895696..1896892 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PALA4_RS08790 (PALA4_01739) uvrB 1897080..1899092 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=633968 PALA4_RS08775 WP_003091430.1 1895150..1895479(+) (comEA/comE1) [Pseudomonas aeruginosa strain PALA4]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=633968 PALA4_RS08775 WP_003091430.1 1895150..1895479(+) (comEA/comE1) [Pseudomonas aeruginosa strain PALA4]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCTGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385