Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRK44_RS04300 Genome accession   NZ_CP088921
Coordinates   963513..963923 (+) Length   136 a.a.
NCBI ID   WP_274378359.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain FW104-R3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 958513..968923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK44_RS04275 (LRK44_04275) - 959277..960203 (-) 927 WP_015447000.1 aspartate carbamoyltransferase catalytic subunit -
  LRK44_RS04280 (LRK44_04280) ruvX 960239..960688 (-) 450 WP_015447001.1 Holliday junction resolvase RuvX -
  LRK44_RS04285 (LRK44_04285) - 960685..961254 (-) 570 WP_027485856.1 YqgE/AlgH family protein -
  LRK44_RS04290 (LRK44_04290) - 961307..962176 (-) 870 WP_007507051.1 energy transducer TonB -
  LRK44_RS04295 (LRK44_04295) gshB 962173..963150 (-) 978 WP_007507050.1 glutathione synthase -
  LRK44_RS04300 (LRK44_04300) pilG 963513..963923 (+) 411 WP_274378359.1 response regulator Regulator
  LRK44_RS04305 (LRK44_04305) - 963946..964317 (+) 372 WP_007507047.1 response regulator -
  LRK44_RS04310 (LRK44_04310) - 964314..964853 (+) 540 WP_007507045.1 chemotaxis protein CheW -
  LRK44_RS04315 (LRK44_04315) - 964984..967014 (+) 2031 WP_007507043.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15092.54 Da        Isoelectric Point: 7.8835

>NTDB_id=633967 LRK44_RS04300 WP_274378359.1 963513..963923(+) (pilG) [Rhodanobacter denitrificans strain FW104-R3]
MNLNMSANELDGLKVMVIDDSKTIRRTAETLLKKEGCEVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=633967 LRK44_RS04300 WP_274378359.1 963513..963923(+) (pilG) [Rhodanobacter denitrificans strain FW104-R3]
GTGAATTTGAACATGAGCGCTAACGAGTTGGACGGTCTGAAGGTCATGGTGATCGACGACTCGAAGACCATCCGCCGCAC
GGCGGAAACCCTGCTGAAAAAAGAGGGTTGCGAGGTGCTGACCGCCGTCGACGGCTTCGAGGCACTCGCCAAGATCTCCG
ACCAGAAGCCCGCCATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGCTACCAGACCTGCGCGCTGATCAAGAAC
AATCCGCAGTTTCGCGCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGCCGCATCGT
CGGCGCCGAGCAGTATCTGACCAAGCCGTTCACGCGGGACGAACTGCTTGGTGCCATCCATCGCCACGTCAGCACGGTAT
CGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

88.971

0.669