Detailed information NTG0633964

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA4_RS06345
• Genome accession: NZ_CP104866
• Coordinates: 1374516..1375520 (+)
• Length: 334 a.a.
• NCBI ID: WP_003109327.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1369516..1380520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA4_RS06315 (PALA4_01250)	fghA	1369608..1370459 (+)	852	WP_003109330.1	S-formylglutathione hydrolase	-
PALA4_RS06320 (PALA4_01251)	ispF	1370530..1371003 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA4_RS06325 (PALA4_01252)	truD	1371000..1372067 (+)	1068	WP_003109329.1	tRNA pseudouridine(13) synthase TruD	-
PALA4_RS06330 (PALA4_01253)	surE	1372055..1372804 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA4_RS06335 (PALA4_01254)	-	1372837..1373472 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA4_RS06340 (PALA4_01255)	-	1373518..1374411 (+)	894	WP_009313547.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA4_RS06345 (PALA4_01256)	rpoS	1374516..1375520 (+)	1005	WP_003109327.1	RNA polymerase sigma factor RpoS	Regulator
PALA4_RS06350 (PALA4_01257)	fdxA	1375947..1376270 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA4_RS06355 (PALA4_01258)	mutS	1376337..1378904 (-)	2568	WP_003109697.1	DNA mismatch repair protein MutS	-
PALA4_RS06360 (PALA4_01259)	-	1379030..1380037 (-)	1008	WP_003109698.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38265.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=633964 PALA4_RS06345 WP_003109327.1 1374516..1375520(+) (rpoS) [Pseudomonas aeruginosa strain PALA4]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRTTPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=633964 PALA4_RS06345 WP_003109327.1 1374516..1375520(+) (rpoS) [Pseudomonas aeruginosa strain PALA4]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGACAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAACTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653