Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRK24_RS15215 Genome accession   NZ_CP088919
Coordinates   3302026..3302436 (-) Length   136 a.a.
NCBI ID   WP_274378359.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain DSM-24678     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3297026..3307436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK24_RS15200 (LRK24_15200) - 3298935..3300965 (-) 2031 WP_007507043.1 methyl-accepting chemotaxis protein -
  LRK24_RS15205 (LRK24_15205) - 3301096..3301635 (-) 540 WP_007507045.1 chemotaxis protein CheW -
  LRK24_RS15210 (LRK24_15210) - 3301632..3302003 (-) 372 WP_007507047.1 response regulator -
  LRK24_RS15215 (LRK24_15215) pilG 3302026..3302436 (-) 411 WP_274378359.1 response regulator Regulator
  LRK24_RS15220 (LRK24_15220) gshB 3302799..3303776 (+) 978 WP_007507050.1 glutathione synthase -
  LRK24_RS15225 (LRK24_15225) - 3303773..3304642 (+) 870 WP_007507051.1 energy transducer TonB -
  LRK24_RS15230 (LRK24_15230) - 3304695..3305264 (+) 570 WP_027485856.1 YqgE/AlgH family protein -
  LRK24_RS15235 (LRK24_15235) ruvX 3305261..3305710 (+) 450 WP_015447001.1 Holliday junction resolvase RuvX -
  LRK24_RS15240 (LRK24_15240) - 3305746..3306672 (+) 927 WP_007507054.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15092.54 Da        Isoelectric Point: 7.8835

>NTDB_id=633933 LRK24_RS15215 WP_274378359.1 3302026..3302436(-) (pilG) [Rhodanobacter denitrificans strain DSM-24678]
MNLNMSANELDGLKVMVIDDSKTIRRTAETLLKKEGCEVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=633933 LRK24_RS15215 WP_274378359.1 3302026..3302436(-) (pilG) [Rhodanobacter denitrificans strain DSM-24678]
GTGAATTTGAACATGAGCGCTAACGAGTTGGACGGTCTGAAGGTCATGGTGATCGACGACTCGAAGACCATCCGCCGCAC
GGCGGAAACCCTGCTGAAAAAAGAGGGTTGCGAGGTGCTGACCGCCGTCGACGGCTTCGAGGCACTCGCCAAGATCTCCG
ACCAGAAGCCCGCCATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGCTACCAGACCTGCGCGCTGATCAAGAAC
AATCCGCAGTTTCGCGCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGCCGCATCGT
CGGCGCCGAGCAGTATCTGACCAAGCCGTTCACGCGGGACGAACTGCTTGGTGCCATCCATCGCCACGTCAGCACGGTAT
CGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

88.971

0.669