Detailed information NTG0633874

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA2_RS06665
• Genome accession: NZ_CP104865
• Coordinates: 1426444..1427448 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1421444..1432448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA2_RS06635 (PALA2_01319)	fghA	1421536..1422387 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
PALA2_RS06640 (PALA2_01320)	ispF	1422458..1422931 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA2_RS06645 (PALA2_01321)	truD	1422928..1423995 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PALA2_RS06650 (PALA2_01322)	surE	1423983..1424732 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
PALA2_RS06655 (PALA2_01323)	-	1424765..1425400 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA2_RS06660 (PALA2_01324)	-	1425446..1426339 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA2_RS06665 (PALA2_01325)	rpoS	1426444..1427448 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA2_RS06670 (PALA2_01326)	fdxA	1427870..1428193 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA2_RS06675 (PALA2_01327)	mutS	1428260..1430827 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA2_RS06680 (PALA2_01328)	-	1430953..1431960 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=633874 PALA2_RS06665 WP_003113871.1 1426444..1427448(+) (rpoS) [Pseudomonas aeruginosa strain PALA2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=633874 PALA2_RS06665 WP_003113871.1 1426444..1427448(+) (rpoS) [Pseudomonas aeruginosa strain PALA2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653