Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA2_RS01920 Genome accession   NZ_CP104865
Coordinates   418821..420197 (+) Length   458 a.a.
NCBI ID   WP_061201405.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413821..425197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA2_RS01900 (PALA2_00382) - 414658..415224 (-) 567 WP_003084491.1 hypothetical protein -
  PALA2_RS01905 (PALA2_00383) rsmD 415227..415823 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA2_RS01910 (PALA2_00384) - 415823..417310 (-) 1488 WP_003117890.1 M16 family metallopeptidase -
  PALA2_RS01915 (PALA2_00385) - 417303..418700 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA2_RS01920 (PALA2_00386) pilA 418821..420197 (+) 1377 WP_061201405.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA2_RS01925 (PALA2_00387) ftsE 420194..420865 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA2_RS01930 (PALA2_00388) ftsX 420865..421872 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA2_RS01935 (PALA2_00389) rpoH 421986..422840 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA2_RS01940 (PALA2_00390) - 422905..423510 (+) 606 WP_004346634.1 hypothetical protein -
  PALA2_RS01945 (PALA2_00391) mtgA 423515..424246 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA2_RS01950 (PALA2_00392) - 424283..424660 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA2_RS01955 (PALA2_00393) thiS 424763..424963 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48777.19 Da        Isoelectric Point: 4.4808

>NTDB_id=633858 PALA2_RS01920 WP_061201405.1 418821..420197(+) (pilA) [Pseudomonas aeruginosa strain PALA2]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGL
SKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPV
EQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSA
SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELT
GLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=633858 PALA2_RS01920 WP_061201405.1 418821..420197(+) (pilA) [Pseudomonas aeruginosa strain PALA2]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCG
TTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTG
TCCAAGACCAGCGCCAGCATTGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGA
CGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCG
TGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTG
GAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCAC
CACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCG
CCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCC
TCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCA
TACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGG
TCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACC
GGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGAT
CCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAG
AGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(168-233)

SRP54-type protein, GTPase domain (SRP54)

(253-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.591

96.07

0.448