Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N6G78_RS18410 Genome accession   NZ_CP104855
Coordinates   3578975..3580108 (-) Length   377 a.a.
NCBI ID   WP_015384884.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573975..3585108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS18370 (N6G78_18370) ywnA 3574101..3574502 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  N6G78_RS18375 (N6G78_18375) ureC 3574637..3576346 (-) 1710 WP_015384878.1 urease subunit alpha -
  N6G78_RS18380 (N6G78_18380) ureB 3576343..3576717 (-) 375 WP_015384879.1 urease subunit beta -
  N6G78_RS18385 (N6G78_18385) ureA 3576714..3577031 (-) 318 WP_015483811.1 urease subunit gamma -
  N6G78_RS18390 (N6G78_18390) - 3577190..3577386 (-) 197 Protein_3569 hypothetical protein -
  N6G78_RS20730 (N6G78_18395) - 3577653..3577856 (-) 204 Protein_3570 urea ABC transporter substrate-binding protein -
  N6G78_RS18400 (N6G78_18400) csbD 3578079..3578267 (-) 189 WP_003227718.1 stress response protein CsbD -
  N6G78_RS18405 (N6G78_18405) - 3578340..3578819 (-) 480 WP_015483813.1 hypothetical protein -
  N6G78_RS18410 (N6G78_18410) rapC 3578975..3580108 (-) 1134 WP_015384884.1 response regulator aspartate phosphatase RapB Regulator
  N6G78_RS18415 (N6G78_18415) moaA 3580301..3581326 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  N6G78_RS18420 (N6G78_18420) fdhD 3581342..3582130 (-) 789 WP_015483815.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  N6G78_RS18425 (N6G78_18425) - 3582376..3582537 (-) 162 WP_003227706.1 hypothetical protein -
  N6G78_RS18430 (N6G78_18430) ywmD 3582632..3583306 (-) 675 WP_003243553.1 vWA domain-containing protein -
  N6G78_RS18435 (N6G78_18435) - 3583359..3583499 (-) 141 WP_015384887.1 hypothetical protein -
  N6G78_RS18440 (N6G78_18440) ywmC 3583630..3584313 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44940.07 Da        Isoelectric Point: 4.7494

>NTDB_id=633842 N6G78_RS18410 WP_015384884.1 3578975..3580108(-) (rapC) [Bacillus subtilis strain TY-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKANDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AESFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALFVESVNLDMIQE
VFNYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=633842 N6G78_RS18410 WP_015384884.1 3578975..3580108(-) (rapC) [Bacillus subtilis strain TY-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTAATGATTTTTACAGAGTCAGAAGAATTCAATGTCATTTTGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGGCAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATCCTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCTTTATTTGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTAATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-306)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.105

100

0.424
  rapF Bacillus subtilis subsp. subtilis str. 168

41.6

99.469

0.414