Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   N6G78_RS14760 Genome accession   NZ_CP104855
Coordinates   2850983..2851693 (-) Length   236 a.a.
NCBI ID   WP_015384400.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2845983..2856693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS14740 (N6G78_14740) cysK 2846034..2846969 (+) 936 WP_015384397.1 cysteine synthase A -
  N6G78_RS14745 (N6G78_14745) pepV 2847003..2848394 (-) 1392 WP_015483572.1 dipeptidase PepV -
  N6G78_RS14750 (N6G78_14750) pbuO 2848491..2849789 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  N6G78_RS14755 (N6G78_14755) ythQ 2849829..2850986 (-) 1158 WP_015384399.1 ABC transporter permease -
  N6G78_RS14760 (N6G78_14760) pptA 2850983..2851693 (-) 711 WP_015384400.1 ABC transporter ATP-binding protein Regulator
  N6G78_RS14765 (N6G78_14765) ytzE 2851983..2852204 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  N6G78_RS14770 (N6G78_14770) rsuA 2852326..2853045 (-) 720 WP_015384401.1 pseudouridine synthase -
  N6G78_RS14775 (N6G78_14775) murJ 2853114..2854748 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  N6G78_RS14780 (N6G78_14780) ytfP 2854951..2856213 (+) 1263 WP_015483573.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26558.73 Da        Isoelectric Point: 6.0871

>NTDB_id=633824 N6G78_RS14760 WP_015384400.1 2850983..2851693(-) (pptA) [Bacillus subtilis strain TY-1]
MTSLLEASIERAGYTSRKIVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIKEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=633824 N6G78_RS14760 WP_015384400.1 2850983..2851693(-) (pptA) [Bacillus subtilis strain TY-1]
TTGACAAGTTTGCTTGAAGCTTCAATAGAACGGGCCGGGTATACAAGCCGAAAAATAGTGCTCACCGATGTTTTTTTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATCAAAGAGAGGGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.69

95.763

0.428
  pptA Streptococcus thermophilus LMD-9

44.248

95.763

0.424