Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LRX86_RS01815 Genome accession   NZ_CP088895
Coordinates   387490..388230 (+) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382490..393230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS01800 (LRX86_01800) ponA 383077..385632 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LRX86_RS01805 (LRX86_01805) pilM 385794..386852 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LRX86_RS01810 (LRX86_01810) pilN 386852..387493 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LRX86_RS01815 (LRX86_01815) pilO 387490..388230 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  LRX86_RS01820 (LRX86_01820) pilP 388241..388768 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LRX86_RS01825 (LRX86_01825) pilQ 388831..390996 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  LRX86_RS01830 (LRX86_01830) aroK 391008..391577 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LRX86_RS01835 (LRX86_01835) aroB 391606..392688 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=633788 LRX86_RS01815 WP_000076106.1 387490..388230(+) (pilO) [Acinetobacter baumannii strain DETAB-R21]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=633788 LRX86_RS01815 WP_000076106.1 387490..388230(+) (pilO) [Acinetobacter baumannii strain DETAB-R21]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCCCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679