Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   N6G78_RS11365 Genome accession   NZ_CP104855
Coordinates   2228929..2230419 (-) Length   496 a.a.
NCBI ID   WP_015383993.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223929..2235419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS11335 (N6G78_11335) gudB 2224071..2225345 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  N6G78_RS11340 (N6G78_11340) mecB 2225501..2226085 (-) 585 WP_003230533.1 genetic competence negative regulator -
  N6G78_RS11345 (N6G78_11345) ypbG 2226244..2227023 (-) 780 WP_015383990.1 metallophosphoesterase -
  N6G78_RS11350 (N6G78_11350) ypbF 2227109..2227552 (-) 444 WP_015383991.1 YpbF family protein -
  N6G78_RS11355 (N6G78_11355) claE 2227615..2228349 (-) 735 WP_015483388.1 LysM peptidoglycan-binding domain-containing protein -
  N6G78_RS11360 (N6G78_11360) ypbD 2228300..2228887 (-) 588 WP_284692443.1 CPBP family intramembrane glutamic endopeptidase -
  N6G78_RS11365 (N6G78_11365) recS 2228929..2230419 (-) 1491 WP_015383993.1 RecQ family ATP-dependent DNA helicase Machinery gene
  N6G78_RS11370 (N6G78_11370) gmmB 2230412..2231470 (-) 1059 WP_015483390.1 helix-turn-helix domain-containing protein -
  N6G78_RS11375 (N6G78_11375) fdxA 2231736..2231984 (+) 249 WP_003225461.1 ferredoxin -
  N6G78_RS11380 (N6G78_11380) fmnP 2232024..2232596 (-) 573 WP_015383996.1 riboflavin transporter FmnP -
  N6G78_RS11385 (N6G78_11385) serA 2233093..2234670 (+) 1578 WP_015483391.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56533.03 Da        Isoelectric Point: 6.5039

>NTDB_id=633788 N6G78_RS11365 WP_015383993.1 2228929..2230419(-) (recS) [Bacillus subtilis strain TY-1]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNHPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=633788 N6G78_RS11365 WP_015383993.1 2228929..2230419(-) (recS) [Bacillus subtilis strain TY-1]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGTAGAGCG
GGCCGCGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCACCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996