Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   N6G78_RS08105 Genome accession   NZ_CP104855
Coordinates   1536066..1537088 (+) Length   340 a.a.
NCBI ID   WP_015483198.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531066..1542088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS08070 (N6G78_08070) ylbE 1531366..1531605 (+) 240 WP_003232231.1 YlbE-like family protein -
  N6G78_RS08075 (N6G78_08075) ylbF 1531721..1532170 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  N6G78_RS08080 (N6G78_08080) ylbG 1532225..1532497 (+) 273 WP_009967171.1 YlbG family protein -
  N6G78_RS08085 (N6G78_08085) rsmD 1532820..1533374 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N6G78_RS08090 (N6G78_08090) coaD 1533379..1533864 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  N6G78_RS08095 (N6G78_08095) spoVV 1533875..1535101 (-) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  N6G78_RS08100 (N6G78_08100) ylbK 1535282..1536064 (+) 783 WP_015383589.1 patatin family protein -
  N6G78_RS08105 (N6G78_08105) sepM 1536066..1537088 (+) 1023 WP_015483198.1 protease DdcP Regulator
  N6G78_RS20700 - 1537279..1537782 (-) 504 WP_269808339.1 hypothetical protein -
  N6G78_RS08115 (N6G78_08115) - 1537801..1539033 (-) 1233 WP_015383591.1 nucleotidyltransferase -
  N6G78_RS08120 (N6G78_08120) - 1539030..1539215 (-) 186 WP_003232215.1 hypothetical protein -
  N6G78_RS08125 (N6G78_08125) ylbN 1539243..1539761 (+) 519 WP_014479718.1 YceD family protein -
  N6G78_RS08130 (N6G78_08130) rpmF 1539783..1539962 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  N6G78_RS08135 (N6G78_08135) gerR 1540108..1540689 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  N6G78_RS08140 (N6G78_08140) ylbP 1540746..1541228 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37551.11 Da        Isoelectric Point: 5.9932

>NTDB_id=633770 N6G78_RS08105 WP_015483198.1 1536066..1537088(+) (sepM) [Bacillus subtilis strain TY-1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=633770 N6G78_RS08105 WP_015483198.1 1536066..1537088(+) (sepM) [Bacillus subtilis strain TY-1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGTATTAAGGAGGAAGGCGAGTCAGATAAGGAATATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCACTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTTCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403