Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N6G78_RS06725 Genome accession   NZ_CP104855
Coordinates   1283742..1284878 (+) Length   378 a.a.
NCBI ID   WP_080030661.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278742..1289878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS06705 (N6G78_06705) uxaA 1279192..1280685 (+) 1494 WP_015383416.1 UxaA family hydrolase -
  N6G78_RS06710 (N6G78_06710) yjnA 1280724..1281488 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  N6G78_RS06715 (N6G78_06715) bstD 1281713..1282177 (-) 465 WP_015383417.1 DinB family protein -
  N6G78_RS06720 (N6G78_06720) yjoB 1282326..1283597 (+) 1272 WP_015383418.1 ATPase YjoB -
  N6G78_RS06725 (N6G78_06725) rapC 1283742..1284878 (+) 1137 WP_080030661.1 response regulator aspartate phosphatase RapA Regulator
  N6G78_RS06730 (N6G78_06730) phrA 1284868..1285002 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  N6G78_RS06735 (N6G78_06735) yjpA 1285032..1285289 (-) 258 WP_003232731.1 YciI family protein -
  N6G78_RS06740 (N6G78_06740) xlyB 1285409..1286362 (+) 954 WP_015483118.1 N-acetylmuramoyl-L-alanine amidase -
  N6G78_RS06745 (N6G78_06745) yjqA 1286402..1286779 (-) 378 WP_015483119.1 PH domain-containing protein -
  N6G78_RS06750 (N6G78_06750) pghB 1286884..1287486 (+) 603 WP_015383421.1 poly-gamma-glutamate hydrolase family protein -
  N6G78_RS06755 (N6G78_06755) xpdC 1287563..1288399 (+) 837 WP_003245071.1 manganese catalase family protein -
  N6G78_RS06760 (N6G78_06760) xkdA 1288443..1289039 (-) 597 WP_015483120.1 ImmA/IrrE family metallo-endopeptidase -
  N6G78_RS06765 (N6G78_06765) xre 1289201..1289542 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45032.20 Da        Isoelectric Point: 4.7189

>NTDB_id=633759 N6G78_RS06725 WP_080030661.1 1283742..1284878(+) (rapC) [Bacillus subtilis strain TY-1]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=633759 N6G78_RS06725 WP_080030661.1 1283742..1284878(+) (rapC) [Bacillus subtilis strain TY-1]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACTGGGCTTCTCGATTATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415