Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LRX85_RS09660 Genome accession   NZ_CP088894
Coordinates   2025416..2025796 (-) Length   126 a.a.
NCBI ID   WP_254231386.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1935     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2020416..2030796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX85_RS09630 (LRX85_09625) tadA 2020535..2021038 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  LRX85_RS09635 (LRX85_09630) - 2021045..2022169 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LRX85_RS09640 (LRX85_09635) ung 2022166..2022879 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  LRX85_RS09645 (LRX85_09640) - 2022930..2023526 (-) 597 WP_000908454.1 6-carboxytetrahydropterin synthase -
  LRX85_RS09650 (LRX85_09645) gspK 2023756..2024715 (-) 960 WP_000301468.1 type II secretion system minor pseudopilin GspK -
  LRX85_RS09655 (LRX85_09650) xcpW 2024715..2025416 (-) 702 WP_000594585.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LRX85_RS09660 (LRX85_09655) xcpV 2025416..2025796 (-) 381 WP_254231386.1 type II secretion system minor pseudopilin GspI Machinery gene
  LRX85_RS09665 (LRX85_09660) - 2025786..2026340 (-) 555 WP_000841373.1 type II secretion system protein -
  LRX85_RS09670 (LRX85_09665) - 2026350..2026958 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LRX85_RS09675 (LRX85_09670) - 2026996..2027769 (-) 774 WP_000497298.1 TatD family hydrolase -
  LRX85_RS09680 (LRX85_09675) - 2027787..2028128 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  LRX85_RS09685 (LRX85_09680) - 2028140..2029120 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LRX85_RS09690 (LRX85_09685) kdsB 2029132..2029893 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13991.24 Da        Isoelectric Point: 9.8004

>NTDB_id=633759 LRX85_RS09660 WP_254231386.1 2025416..2025796(-) (xcpV) [Acinetobacter baumannii strain XH1935]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYLVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=633759 LRX85_RS09660 WP_254231386.1 2025416..2025796(-) (xcpV) [Acinetobacter baumannii strain XH1935]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCTAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992