Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   N6G78_RS02380 Genome accession   NZ_CP104855
Coordinates   467219..467653 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain TY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462219..472653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS02350 (N6G78_02350) ydaD 462867..463727 (+) 861 WP_015382797.1 SDR family oxidoreductase -
  N6G78_RS02355 (N6G78_02355) lyxE 463743..464246 (+) 504 WP_015382798.1 D-lyxose ketol-isomerase -
  N6G78_RS02360 (N6G78_02360) ydaF 464333..464884 (+) 552 WP_015382799.1 GNAT family N-acetyltransferase -
  N6G78_RS02365 (N6G78_02365) ydaG 464962..465384 (+) 423 WP_015382800.1 pyridoxamine 5'-phosphate oxidase family protein -
  N6G78_RS02370 (N6G78_02370) amj 465890..466699 (+) 810 WP_003234394.1 lipid II flippase Amj -
  N6G78_RS02375 (N6G78_02375) ydzA 466744..467034 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  N6G78_RS02380 (N6G78_02380) lrpC 467219..467653 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  N6G78_RS02385 (N6G78_02385) topB 467718..469901 (+) 2184 WP_015382801.1 DNA topoisomerase III -
  N6G78_RS02390 (N6G78_02390) ephJ 470105..471193 (+) 1089 WP_015482816.1 glycosyl hydrolase family 8 -
  N6G78_RS02395 (N6G78_02395) epsK 471174..472025 (+) 852 WP_015382803.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=633729 N6G78_RS02380 WP_003246585.1 467219..467653(+) (lrpC) [Bacillus subtilis strain TY-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=633729 N6G78_RS02380 WP_003246585.1 467219..467653(+) (lrpC) [Bacillus subtilis strain TY-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAACTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCTGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1