Detailed information NTG0633718

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: N6G78_RS01620
• Genome accession: NZ_CP104855
• Coordinates: 295402..296523 (+)
• Length: 373 a.a.
• NCBI ID: WP_015382685.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TY-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 290402..301523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N6G78_RS01600 (N6G78_01600)	-	291485..291616 (-)	132	WP_003246334.1	hypothetical protein	-
N6G78_RS01605 (N6G78_01605)	ycdB	291790..293211 (+)	1422	WP_015382683.1	YcdB/YcdC domain-containing protein	-
N6G78_RS01610 (N6G78_01610)	ycdC	293398..294759 (+)	1362	WP_046340299.1	YcdB/YcdC domain-containing protein	-
N6G78_RS01615 (N6G78_01615)	cwlK	294767..295279 (-)	513	WP_041517631.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
N6G78_RS01620 (N6G78_01620)	rapF	295402..296523 (+)	1122	WP_015382685.1	response regulator aspartate phosphatase RapJ	Regulator
N6G78_RS01625 (N6G78_01625)	ycdF	296631..297407 (+)	777	WP_015382686.1	SDR family oxidoreductase	-
N6G78_RS01630 (N6G78_01630)	ycdG	297432..299117 (+)	1686	WP_015382687.1	glycoside hydrolase family 13 protein	-
N6G78_RS01635 (N6G78_01635)	znuA	299305..300264 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
N6G78_RS01640 (N6G78_01640)	znuC	300319..301014 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44444.30 Da
• Isoelectric Point: 4.7895

>NTDB_id=633718 N6G78_RS01620 WP_015382685.1 295402..296523(+) (rapF) [Bacillus subtilis strain TY-1]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSADEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=633718 N6G78_RS01620 WP_015382685.1 295402..296523(+) (rapF) [Bacillus subtilis strain TY-1]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGCCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGAGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGATGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405