Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   N6G78_RS00330 Genome accession   NZ_CP104855
Coordinates   59579..59809 (+) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54579..64809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS00300 (N6G78_00300) ridA 54742..55119 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  N6G78_RS00305 (N6G78_00305) spoVG 55314..55607 (+) 294 WP_003218346.1 septation regulator SpoVG -
  N6G78_RS00310 (N6G78_00310) glmU 55800..57170 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  N6G78_RS00315 (N6G78_00315) prsS 57193..58146 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  N6G78_RS00320 (N6G78_00320) rplYB 58232..58846 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  N6G78_RS00325 (N6G78_00325) pth 58953..59519 (+) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  N6G78_RS00330 (N6G78_00330) subA/fin 59579..59809 (+) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  N6G78_RS00335 (N6G78_00335) mfd 59879..63412 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  N6G78_RS00340 (N6G78_00340) spoVT 63548..64084 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=633712 N6G78_RS00330 WP_015482693.1 59579..59809(+) (subA/fin) [Bacillus subtilis strain TY-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=633712 N6G78_RS00330 WP_015482693.1 59579..59809(+) (subA/fin) [Bacillus subtilis strain TY-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987