Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KDJ21_RS13840 Genome accession   NZ_CP088268
Coordinates   2817760..2819460 (+) Length   566 a.a.
NCBI ID   WP_212138555.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2812760..2824460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS13815 (KDJ21_013815) - 2812850..2813104 (+) 255 WP_098796035.1 exodeoxyribonuclease VII small subunit -
  KDJ21_RS13820 (KDJ21_013820) - 2813101..2813985 (+) 885 WP_232273292.1 polyprenyl synthetase family protein -
  KDJ21_RS13825 (KDJ21_013825) dxs 2814283..2816184 (+) 1902 WP_212138557.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KDJ21_RS13830 (KDJ21_013830) - 2816181..2817029 (+) 849 WP_212138556.1 TlyA family RNA methyltransferase -
  KDJ21_RS13835 (KDJ21_013835) ahrC 2817260..2817709 (+) 450 WP_121662728.1 transcriptional regulator AhrC/ArgR -
  KDJ21_RS13840 (KDJ21_013840) recN 2817760..2819460 (+) 1701 WP_212138555.1 DNA repair protein RecN Machinery gene
  KDJ21_RS13845 (KDJ21_013845) spoIVB 2819675..2820970 (+) 1296 WP_212138554.1 SpoIVB peptidase -
  KDJ21_RS13850 (KDJ21_013850) spo0A 2821275..2822066 (+) 792 WP_121662724.1 sporulation transcription factor Spo0A -
  KDJ21_RS13855 (KDJ21_013855) - 2822135..2822653 (-) 519 WP_212138553.1 hypothetical protein -
  KDJ21_RS13860 (KDJ21_013860) - 2822734..2823708 (-) 975 WP_212138552.1 ketoacyl-ACP synthase III -
  KDJ21_RS13865 (KDJ21_013865) - 2823920..2824066 (-) 147 WP_212138551.1 YycC family protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63949.62 Da        Isoelectric Point: 4.7974

>NTDB_id=633641 KDJ21_RS13840 WP_212138555.1 2817760..2819460(+) (recN) [Metabacillus litoralis strain NCTR108]
MLAELSIKNFAIIESLTVSFERGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEALFLLDDTNHPVYLK
CEEFGIDVSDGMIILRRDMSSTGKSICRINGKLVTIAVLREVGQLLVDIHGQHDNQELMNEENHLSLLDQYGGQEVKDAL
EAYLDVFRHYDGLKKKITQLSENEQEMAHRLDLLQFQLDEIEKAELQPKEDELLQEEKNQISNYEKIYDALQNGYNSLHG
EQKGLDWIGLAMSQLENVGQINSTLKELSETVSNAFYMLEDISYQLRNELESLEFDPGRLNYVEGRLNEINTLKRKYGQS
VEEILTYSAKIEEEIDTIQNKDSHITKLQKELQSITEDLSIEAKNLSMIRQKHAKMLIEEIHQELKELYMEKTSFDVNMK
EKRNNVNEIKYTSTGAEEIEFYISTNPGEPLKPLNKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSNGSQVLCITHLPQVAAMADTHLYIAKETKSGRTKTSVKPLVEDEKVKEIGRMIAGVEVTELSKEHAKELLLL
ASSSKR

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=633641 KDJ21_RS13840 WP_212138555.1 2817760..2819460(+) (recN) [Metabacillus litoralis strain NCTR108]
TTGTTAGCGGAATTATCAATAAAAAACTTTGCGATTATTGAATCTTTAACAGTTTCATTTGAGAGAGGACTAACTGTATT
AACTGGTGAAACCGGGGCTGGAAAGTCAATCATCATTGATGCCATTCATTTATTAGCAGGAGCAAGAGGATCTTCGGAAT
TTGTTCGGTATGGAGAAAAACGGGCAGAATTAGAGGCGCTATTTTTATTAGATGATACGAATCATCCTGTTTATCTCAAA
TGTGAAGAGTTTGGAATTGATGTTAGTGATGGAATGATTATTCTTAGAAGAGATATGTCTTCAACAGGTAAAAGTATTTG
CCGGATAAATGGGAAGTTAGTAACAATTGCTGTTTTAAGAGAAGTTGGTCAGCTTTTGGTTGATATTCATGGGCAGCATG
ATAATCAAGAGCTTATGAACGAGGAAAATCATCTATCATTGCTGGATCAATATGGTGGGCAAGAAGTAAAGGATGCATTA
GAAGCCTATTTAGATGTATTCCGACATTATGATGGCTTAAAAAAGAAAATTACCCAGCTTTCCGAAAATGAACAGGAAAT
GGCTCACCGGCTTGATTTGCTTCAATTTCAATTAGATGAAATAGAAAAGGCAGAGCTACAGCCAAAAGAGGACGAGCTAT
TACAAGAAGAGAAAAATCAAATATCGAACTATGAAAAGATATATGATGCACTGCAAAACGGTTATAACTCACTTCATGGC
GAACAAAAAGGGTTAGATTGGATAGGTCTTGCCATGAGTCAGCTTGAAAATGTGGGCCAAATTAATTCTACTTTAAAGGA
ACTTTCAGAGACGGTTTCAAACGCTTTTTATATGTTGGAAGACATTTCGTATCAGCTACGAAATGAATTGGAATCTCTAG
AATTTGATCCTGGACGACTGAATTACGTTGAGGGTCGATTGAATGAAATTAACACTTTAAAGAGAAAATATGGTCAATCT
GTTGAAGAGATTTTGACATATTCAGCTAAGATTGAAGAGGAAATCGATACGATTCAAAATAAAGATAGCCATATAACTAA
ATTACAAAAAGAGCTTCAATCGATTACAGAAGATTTATCCATTGAGGCGAAAAACCTTTCAATGATTAGGCAGAAGCATG
CTAAGATGCTAATTGAGGAAATTCATCAAGAGCTTAAAGAGTTATATATGGAGAAAACAAGCTTTGATGTTAACATGAAA
GAAAAAAGAAACAATGTTAACGAGATAAAATATACTTCAACAGGTGCAGAAGAAATTGAATTTTATATTTCTACTAACCC
TGGTGAACCATTAAAACCATTAAATAAAACTGCATCAGGTGGAGAACTCTCCCGGATCATGCTTGCAATGAAAAGTATCT
TTTCACAGCACCAAGGAATCACATCAATTATTTTTGATGAAGTTGATACCGGTGTTAGTGGGCGTGTTGCTCAAGCTATT
GCTGAAAAAATTTATCGAGTTTCTAACGGTTCTCAAGTTCTATGTATTACACATCTTCCACAGGTCGCTGCAATGGCTGA
TACACACTTATATATTGCAAAAGAAACAAAATCGGGTCGAACCAAAACAAGTGTTAAGCCATTGGTAGAAGACGAGAAAG
TTAAAGAAATCGGACGAATGATTGCTGGGGTAGAAGTAACGGAGCTTTCAAAGGAACATGCAAAAGAACTTCTGTTACTT
GCTTCTTCATCAAAACGTTAA

Domains

Predicted by InterproScan.

AAA ATPase domain (AAA_15)

(1-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

67.073

100

0.68