Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KDJ21_RS07580 Genome accession   NZ_CP088268
Coordinates   1535050..1535679 (-) Length   209 a.a.
NCBI ID   WP_121663692.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530050..1540679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS07550 (KDJ21_007550) - 1530872..1531765 (+) 894 WP_212135637.1 helix-turn-helix domain-containing protein -
  KDJ21_RS07555 (KDJ21_007555) - 1531921..1532076 (+) 156 WP_162987491.1 hypothetical protein -
  KDJ21_RS07560 (KDJ21_007560) - 1532330..1532491 (+) 162 WP_212135638.1 hypothetical protein -
  KDJ21_RS07565 (KDJ21_007565) - 1532508..1532681 (+) 174 WP_162987489.1 hypothetical protein -
  KDJ21_RS07570 (KDJ21_007570) - 1532725..1533654 (+) 930 WP_232273778.1 PDZ domain-containing protein -
  KDJ21_RS07575 (KDJ21_007575) - 1533606..1535003 (+) 1398 WP_232273779.1 sensor histidine kinase -
  KDJ21_RS07580 (KDJ21_007580) comA 1535050..1535679 (-) 630 WP_121663692.1 LuxR C-terminal-related transcriptional regulator Regulator
  KDJ21_RS07585 (KDJ21_007585) - 1535925..1536353 (+) 429 WP_212135639.1 hypothetical protein -
  KDJ21_RS07590 (KDJ21_007590) - 1536476..1536676 (-) 201 WP_162987488.1 Spo0E family sporulation regulatory protein-aspartic acid phosphatase -
  KDJ21_RS07595 (KDJ21_007595) - 1536902..1537741 (+) 840 WP_212135640.1 class I SAM-dependent methyltransferase -
  KDJ21_RS07600 (KDJ21_007600) - 1537874..1539580 (+) 1707 WP_212135642.1 methyl-accepting chemotaxis protein -
  KDJ21_RS07605 (KDJ21_007605) - 1539808..1540059 (-) 252 WP_212135644.1 DUF3006 domain-containing protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23515.15 Da        Isoelectric Point: 4.9804

>NTDB_id=633621 KDJ21_RS07580 WP_121663692.1 1535050..1535679(-) (comA) [Metabacillus litoralis strain NCTR108]
MVNVLVVDDHIAVTEGTKAILETCNDIFVDTLSPPFSIDLIKDKDYAKYDVILMDINLGLDQNGIEVSKLILKDQPNCKI
IIYTGYDIEDYFLEAVKNGIYGAINKNTTKQSIVTYIHHVLNGEIVMSLELCKRSLKTSAKPPREKVGYTERERKILELL
GEGLTNQEIADRIYVSKRTVEYSITEIFNKLNVSSRAEAVLIAKSEGLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=633621 KDJ21_RS07580 WP_121663692.1 1535050..1535679(-) (comA) [Metabacillus litoralis strain NCTR108]
ATGGTTAATGTATTAGTTGTCGATGATCATATCGCAGTAACTGAAGGAACAAAGGCTATTTTAGAAACGTGTAATGACAT
CTTTGTTGATACTTTGTCGCCCCCTTTTTCTATTGATTTGATTAAGGACAAAGATTATGCAAAATACGATGTTATTTTAA
TGGATATTAATTTAGGTTTGGATCAAAACGGAATTGAAGTGTCTAAACTTATTCTGAAGGACCAGCCTAATTGCAAAATC
ATTATTTATACGGGATATGACATTGAGGATTATTTTTTAGAGGCTGTCAAGAATGGGATTTACGGAGCAATAAACAAAAA
CACAACAAAACAAAGTATCGTTACTTATATTCATCATGTTCTTAACGGGGAAATTGTGATGTCATTAGAGCTTTGCAAAA
GATCTCTAAAGACTTCGGCAAAGCCACCAAGAGAGAAAGTTGGCTACACGGAGCGTGAGCGAAAAATCCTAGAATTATTA
GGCGAAGGTCTAACAAACCAGGAGATTGCAGATAGAATTTACGTAAGTAAACGAACCGTTGAGTATTCCATCACTGAGAT
ATTCAATAAACTGAACGTATCATCACGTGCAGAAGCCGTTTTAATCGCAAAATCTGAAGGACTGTTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(150-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

54.206

100

0.555