Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KDJ21_RS04690 Genome accession   NZ_CP088268
Coordinates   918443..919819 (-) Length   458 a.a.
NCBI ID   WP_212138675.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 913443..924819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS04670 (KDJ21_004670) ispF 914754..915233 (-) 480 WP_121664165.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KDJ21_RS04675 (KDJ21_004675) ispD 915275..915958 (-) 684 WP_212138674.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KDJ21_RS04680 (KDJ21_004680) - 916068..917165 (-) 1098 WP_121664163.1 PIN/TRAM domain-containing protein -
  KDJ21_RS04685 (KDJ21_004685) disA 917363..918442 (-) 1080 WP_121664162.1 DNA integrity scanning diadenylate cyclase DisA -
  KDJ21_RS04690 (KDJ21_004690) radA 918443..919819 (-) 1377 WP_212138675.1 DNA repair protein RadA Machinery gene
  KDJ21_RS04695 (KDJ21_004695) clpC 920056..922503 (-) 2448 WP_121664160.1 ATP-dependent protease ATP-binding subunit ClpC -
  KDJ21_RS04700 (KDJ21_004700) - 922500..923597 (-) 1098 WP_212138676.1 protein arginine kinase -
  KDJ21_RS04705 (KDJ21_004705) - 923598..924149 (-) 552 WP_121664158.1 UvrB/UvrC motif-containing protein -
  KDJ21_RS04710 (KDJ21_004710) - 924165..924626 (-) 462 WP_121664157.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49534.97 Da        Isoelectric Point: 8.1546

>NTDB_id=633607 KDJ21_RS04690 WP_212138675.1 918443..919819(-) (radA) [Metabacillus litoralis strain NCTR108]
MAKAKVKFICQTCGYESPKWMGKCPGCGEWNTMSEEVLKSGSPRRAVFAHSNQTVQKPSPITTIETTQEPRIFTNLKEFN
RVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSSQLADNGHDVLYISGEESVKQTKLRADRLGVKSNKLLVLSETDLSFISK
AIDETNPAFVVVDSIQTVYHSEISSAPGSVSQVRESTAELMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKEAGLEEVQNPSEIFLEERSKGAAGSTVVASMEGTRSVLVEIQALISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPPKPTDVIIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAVIPHANIGGWNPPDDIEIIGVKNVAEALQKTLGGS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=633607 KDJ21_RS04690 WP_212138675.1 918443..919819(-) (radA) [Metabacillus litoralis strain NCTR108]
ATGGCAAAAGCAAAGGTAAAGTTTATTTGTCAAACCTGTGGCTATGAATCACCGAAGTGGATGGGGAAATGCCCAGGTTG
TGGTGAATGGAATACAATGTCAGAAGAAGTATTAAAGTCTGGGTCACCTCGAAGGGCTGTTTTTGCTCATTCCAATCAAA
CGGTACAAAAACCCTCGCCGATCACAACAATTGAAACAACCCAAGAACCAAGAATATTTACAAACCTTAAAGAATTTAAC
CGTGTACTCGGAAGTGGTATTGTGAAGGGATCTTTAGTTTTAATTGGCGGTGATCCTGGTATTGGGAAATCAACACTGCT
ATTACAAGTATCCTCTCAATTAGCTGATAACGGTCATGATGTTTTATATATATCTGGTGAAGAATCAGTTAAACAAACGA
AATTAAGGGCAGATCGCTTAGGAGTAAAATCTAATAAATTATTAGTTTTATCTGAAACAGACTTAAGCTTTATTTCAAAA
GCAATCGATGAAACAAACCCAGCCTTTGTAGTGGTCGATTCGATTCAAACTGTTTATCATAGTGAAATAAGCTCTGCTCC
GGGTAGTGTATCTCAAGTGAGAGAATCAACAGCTGAATTAATGAGAATAGCCAAAACAAAGGGTATTGCGGTATTCATTG
TTGGTCATGTAACGAAAGAGGGATCAATTGCAGGGCCAAGGCTATTAGAGCATATGGTTGATACAGTCCTCTATTTTGAA
GGAGAAAGACATCATACGTATCGAATATTACGTGCTGTAAAAAACCGCTTTGGGTCTACAAATGAGATGGGAATTTTCGA
AATGAAAGAAGCTGGTTTAGAAGAGGTGCAAAATCCATCAGAGATTTTTCTAGAGGAAAGGTCTAAGGGTGCAGCAGGTT
CAACAGTTGTTGCCTCAATGGAGGGTACCAGATCAGTGCTTGTTGAAATTCAGGCTCTTATCTCTCCGACCAGTTTTGGA
AATCCAAGGAGGATGGCAACCGGAATAGATCATAATCGAGTGCCGTTGTTAATGGCTGTTTTAGAGAAACGTGTTGGTCT
TCTTTTGCAAAACCAGGATGCATATTTAAAGGTTGCCGGAGGCGTAAAGCTTGATGAACCTGCTATTGATTTAGCTGTTG
CTGTTAGTATTGCTTCTAGCTTTAAGGATGCACCACCAAAACCAACTGACGTTATTATTGGGGAAGTGGGGTTAACAGGT
GAGGTTCGTAGAGTGTCGAGAATTGAACAAAGAGTGATTGAGGCTGCAAAGCTAGGTTTTAAGAGGGCGGTCATTCCACA
TGCAAATATAGGCGGTTGGAATCCACCAGATGATATAGAAATTATAGGAGTAAAAAATGTAGCAGAGGCCCTCCAAAAAA
CATTAGGGGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

80.786

100

0.808
  radA Streptococcus mitis NCTC 12261

60.659

99.345

0.603
  radA Streptococcus mitis SK321

60.659

99.345

0.603
  radA Streptococcus pneumoniae Rx1

60.44

99.345

0.6
  radA Streptococcus pneumoniae D39

60.44

99.345

0.6
  radA Streptococcus pneumoniae R6

60.44

99.345

0.6
  radA Streptococcus pneumoniae TIGR4

60.44

99.345

0.6