Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KDJ21_RS01485 Genome accession   NZ_CP088268
Coordinates   293190..294143 (-) Length   317 a.a.
NCBI ID   WP_121664537.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288190..299143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS01460 (KDJ21_001460) - 288830..289411 (-) 582 WP_396653828.1 class D sortase -
  KDJ21_RS01465 (KDJ21_001465) - 289505..290086 (-) 582 WP_162987540.1 NAD(P)H-dependent oxidoreductase -
  KDJ21_RS01470 (KDJ21_001470) - 290221..291267 (-) 1047 WP_121664540.1 siderophore ABC transporter substrate-binding protein -
  KDJ21_RS01475 (KDJ21_001475) - 291483..292250 (-) 768 WP_121664539.1 ABC transporter ATP-binding protein -
  KDJ21_RS01480 (KDJ21_001480) - 292247..293200 (-) 954 WP_098798663.1 iron chelate uptake ABC transporter family permease subunit -
  KDJ21_RS01485 (KDJ21_001485) ceuB 293190..294143 (-) 954 WP_121664537.1 ABC transporter permease Machinery gene
  KDJ21_RS01490 (KDJ21_001490) - 294679..295335 (+) 657 WP_212136010.1 cobalamin B12-binding domain-containing protein -
  KDJ21_RS01495 (KDJ21_001495) - 295360..295989 (+) 630 WP_212136009.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34694.74 Da        Isoelectric Point: 9.1244

>NTDB_id=633605 KDJ21_RS01485 WP_121664537.1 293190..294143(-) (ceuB) [Metabacillus litoralis strain NCTR108]
MRLWMLGIAAIVLSFISLFIGAIDITPMDLLNWDSDETHIFLISRIPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAARLGILISMLFFTNVTYTQQVIFSFAFALAGTFVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIISGRYELLYVSIPAVILAYIYANKFTVAGMGEDFAKNLGLSYKLILNIGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=633605 KDJ21_RS01485 WP_121664537.1 293190..294143(-) (ceuB) [Metabacillus litoralis strain NCTR108]
ATGAGATTATGGATGCTAGGAATTGCAGCTATCGTCCTGTCTTTTATTTCGCTTTTCATCGGAGCAATTGATATTACACC
AATGGACTTGCTTAATTGGGATTCAGACGAAACACATATTTTCCTAATAAGCCGAATTCCACGTTTAATTGCGATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGCTTAATTATGCAGTCTTTAAGCCGAAATAAATTTGTATCACCAACAACTGCT
GGGACATTAGACGCAGCAAGGCTAGGTATTTTAATTTCAATGCTATTTTTTACGAATGTAACATATACCCAGCAAGTTAT
TTTTAGTTTTGCTTTTGCATTGGCTGGAACATTCGTATTTATGCAGATTTTGGATCGTATAAAATTTAAAGATGTTATTT
TTGTTCCATTAATTGGAATTATGTATGGGAATATTTTATCTTCCATTACAACCTTTTTAGGGTATGAAGCTGATCTACTT
CAAAACCTCTCTTCCTGGCTTATGGGGAGCTTTACTTTGATTATTTCTGGTCGCTATGAACTTTTATATGTTAGTATTCC
AGCCGTTATTTTAGCTTATATTTATGCGAATAAATTTACAGTAGCCGGAATGGGAGAAGATTTTGCGAAGAATCTAGGCT
TAAGTTATAAGCTGATTCTAAATATTGGTCTTATTCTTGTTGCAATTATTTCAACAACAGTTGTTCTCACTGTTGGGGTT
ATTCCATTTTTGGGACTAATTGTACCAAATATTGTTTCTCTTTATTTAGGTGATAATTTACGCAAAACAATACCACATAC
CGCGGTATTGGGGGTTGTTTTCTTATTAATATGTGATATTTTAGGGCGGATCATTATTCACCCTTATGAGATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCGATCTTCTTAACGATGCTACTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.814

94.953

0.53