Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   KDJ21_RS00290 Genome accession   NZ_CP088268
Coordinates   51081..52034 (-) Length   317 a.a.
NCBI ID   WP_212136143.1    Uniprot ID   -
Organism   Metabacillus litoralis strain NCTR108     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 46081..57034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ21_RS00260 (KDJ21_000260) - 46172..46924 (-) 753 WP_098798706.1 YjbA family protein -
  KDJ21_RS00265 (KDJ21_000265) - 47095..47862 (-) 768 WP_212136145.1 DUF2268 domain-containing protein -
  KDJ21_RS00270 (KDJ21_000270) fabF 47986..49227 (-) 1242 WP_098798708.1 beta-ketoacyl-ACP synthase II -
  KDJ21_RS00275 (KDJ21_000275) - 49333..50265 (-) 933 WP_121664722.1 beta-ketoacyl-ACP synthase III -
  KDJ21_RS00280 (KDJ21_000280) - 50482..50793 (+) 312 WP_212136144.1 hypothetical protein -
  KDJ21_RS00285 (KDJ21_000285) comZ 50829..51011 (-) 183 WP_098798711.1 ComZ family protein Regulator
  KDJ21_RS00290 (KDJ21_000290) med 51081..52034 (-) 954 WP_212136143.1 BMP family ABC transporter substrate-binding protein Regulator
  KDJ21_RS00295 (KDJ21_000295) - 52107..52898 (-) 792 WP_212136142.1 NAD(P)-dependent oxidoreductase -
  KDJ21_RS00300 (KDJ21_000300) - 53023..53757 (-) 735 WP_212136587.1 hypothetical protein -
  KDJ21_RS00305 (KDJ21_000305) - 54015..54206 (+) 192 WP_121664717.1 DUF2929 family protein -
  KDJ21_RS00310 (KDJ21_000310) - 54276..54455 (-) 180 WP_098798716.1 YjzC family protein -
  KDJ21_RS00315 (KDJ21_000315) - 54594..55403 (+) 810 WP_212136141.1 undecaprenyl-diphosphate phosphatase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35099.45 Da        Isoelectric Point: 3.9165

>NTDB_id=633600 KDJ21_RS00290 WP_212136143.1 51081..52034(-) (med) [Metabacillus litoralis strain NCTR108]
MYIKFGLVLILLFSLFGCGQPVASGKLEKVGLLVPDTIDDKVWGTKGYKGLLKIQSELGVDVFYKEGMNDEFSIRSAIDE
FQEKDVNLIFGHGSEYAAFFNTICKDYPDIHFVLFNGEASGENVTSLNFESHAMGFFGGMVAGEMTNNDKVGVLAAFEWQ
PEIDGFFEGAYFQNENVNVDIQYVQDWNDVTTAMTLLDAMIAEGVDIVYVAGDGYNISVIERLKEEGLYAIGFVSDQSDL
GKGTVLTSTVQHVDVLYELVAKSFDSGELESGELFYDFQDGVISLGKFSPLVEKSFQTDLQESIEEYKESGLLPNQL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=633600 KDJ21_RS00290 WP_212136143.1 51081..52034(-) (med) [Metabacillus litoralis strain NCTR108]
ATGTACATAAAGTTTGGTTTAGTCCTTATCCTTCTTTTTTCGCTTTTTGGTTGTGGACAACCCGTAGCTTCAGGAAAACT
GGAGAAAGTAGGTTTACTTGTACCCGATACAATAGATGATAAAGTATGGGGAACAAAAGGGTACAAGGGGCTGCTGAAGA
TTCAGTCTGAACTAGGCGTGGATGTTTTTTATAAAGAAGGAATGAATGATGAATTTAGTATTCGTTCTGCTATTGACGAA
TTTCAAGAAAAGGATGTTAATCTGATTTTTGGTCATGGTAGTGAATATGCGGCTTTTTTCAATACGATTTGTAAAGATTA
TCCTGATATTCATTTCGTTTTATTCAATGGAGAAGCTTCTGGAGAAAATGTCACAAGCTTAAACTTTGAATCACATGCAA
TGGGCTTTTTTGGTGGAATGGTTGCTGGTGAAATGACGAATAATGATAAGGTTGGTGTATTAGCCGCATTTGAATGGCAG
CCTGAAATTGATGGTTTTTTTGAAGGGGCATATTTCCAAAATGAAAATGTAAATGTTGATATTCAATATGTACAAGATTG
GAATGATGTCACGACAGCTATGACCCTGTTGGATGCAATGATTGCTGAAGGAGTAGACATTGTTTATGTTGCAGGAGATG
GTTATAATATTTCCGTCATTGAGCGTCTAAAGGAAGAGGGCTTGTATGCAATTGGATTTGTATCCGATCAATCTGATTTA
GGGAAAGGAACAGTTCTCACAAGTACAGTTCAACATGTGGATGTTTTATATGAGCTTGTTGCAAAAAGTTTTGATAGCGG
AGAACTAGAAAGTGGAGAATTATTTTATGATTTTCAAGATGGTGTTATTTCACTGGGGAAATTTAGCCCCTTAGTGGAAA
AAAGCTTTCAAACAGATCTTCAAGAATCTATTGAGGAATACAAGGAAAGTGGGCTCTTACCTAATCAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.866

99.054

0.524