Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRS40_RS22335 Genome accession   NZ_CP088265
Coordinates   4330168..4330794 (-) Length   208 a.a.
NCBI ID   WP_142488957.1    Uniprot ID   A0AAP9DCA6
Organism   Leclercia sp. G3L     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4325168..4335794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS40_RS22320 (LRS40_22320) helD 4325405..4327459 (-) 2055 WP_231312718.1 DNA helicase IV -
  LRS40_RS22325 (LRS40_22325) - 4327583..4328029 (+) 447 WP_142488959.1 YccF domain-containing protein -
  LRS40_RS22330 (LRS40_22330) yccS 4328048..4330183 (+) 2136 WP_156263358.1 YccS family putative transporter -
  LRS40_RS22335 (LRS40_22335) sxy/tfoX 4330168..4330794 (-) 627 WP_142488957.1 TfoX/Sxy family DNA transformation protein Regulator
  LRS40_RS22340 (LRS40_22340) sulA 4331012..4331521 (+) 510 WP_142488956.1 SOS-induced cell division inhibitor SulA -
  LRS40_RS22345 (LRS40_22345) ompA 4331875..4332930 (+) 1056 WP_231312719.1 porin OmpA -
  LRS40_RS22350 (LRS40_22350) matP 4332998..4333453 (-) 456 WP_142488954.1 macrodomain Ter protein MatP -
  LRS40_RS22355 (LRS40_22355) - 4333640..4335400 (+) 1761 WP_231312720.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24061.51 Da        Isoelectric Point: 8.2273

>NTDB_id=633588 LRS40_RS22335 WP_142488957.1 4330168..4330794(-) (sxy/tfoX) [Leclercia sp. G3L]
MKKLSYERIYQSTKYLSPLGDVEHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAQYCVKNASSYLTLVKRGRAVLLN
YYRVDEALWQDRDKLLQLSSFALEAARRERRERYKRDRLKDLPNLTFQLEILLNEAGIANEEALRALGAEQCWLKIRELN
RHLSYKVLFALEGAIVGLHEAALPETRRRELVEWYKRLPVDNSTHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=633588 LRS40_RS22335 WP_142488957.1 4330168..4330794(-) (sxy/tfoX) [Leclercia sp. G3L]
ATGAAAAAGTTATCTTACGAACGGATCTATCAATCAACAAAATATCTTTCTCCTCTCGGTGATGTTGAGCATCGTGCCCT
GTTTGGTGGATACACACTGGCGGTGGATGACGCGGTCTTTGCGATGGTGTCAGACGGGGAGCTATACCTGCGCGCCTGCG
AAGAGAGCGCCCAGTATTGCGTCAAAAATGCCTCCTCATACTTAACGCTGGTGAAGCGGGGGCGCGCAGTATTGTTAAAT
TATTATCGCGTCGATGAGGCGCTCTGGCAGGATCGGGATAAGCTCCTGCAGCTCTCCTCATTTGCGCTTGAGGCCGCGCG
GCGGGAACGCCGGGAACGGTACAAGCGCGACAGGTTGAAAGATTTACCCAATCTCACCTTTCAGCTTGAGATCCTGCTGA
ACGAGGCGGGCATCGCCAACGAAGAGGCGTTACGCGCCCTCGGGGCCGAGCAGTGCTGGCTGAAGATCAGAGAGCTTAAC
AGGCACCTGAGCTACAAAGTGCTGTTCGCACTGGAAGGGGCGATCGTCGGATTGCATGAAGCTGCGCTCCCGGAGACAAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAAGGCTGCCGGTGGATAACAGCACTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.825

93.269

0.567