Detailed information NTG0633519

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N7219_RS19405
• Genome accession: NZ_CP104846
• Coordinates: 3916127..3917119 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DFS.1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3911127..3922119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7219_RS19385 (N7219_19385)	ygbM	3911765..3912541 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
N7219_RS19390 (N7219_19390)	ygbN	3912630..3913994 (+)	1365	WP_000104433.1	GntP family transporter	-
N7219_RS19395 (N7219_19395)	-	3914137..3915180 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
N7219_RS19400 (N7219_19400)	-	3915405..3915956 (+)	552	WP_001179444.1	flavodoxin family protein	-
N7219_RS19405 (N7219_19405)	rpoS	3916127..3917119 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N7219_RS19410 (N7219_19410)	nlpD	3917182..3918276 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
N7219_RS19415 (N7219_19415)	pcm	3918461..3919087 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N7219_RS19420 (N7219_19420)	surE	3919081..3919842 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N7219_RS19425 (N7219_19425)	truD	3919823..3920872 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
N7219_RS19430 (N7219_19430)	ispF	3920869..3921348 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N7219_RS19435 (N7219_19435)	ispD	3921348..3922058 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=633519 N7219_RS19405 WP_000081550.1 3916127..3917119(-) (rpoS) [Escherichia coli strain DFS.1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=633519 N7219_RS19405 WP_000081550.1 3916127..3917119(-) (rpoS) [Escherichia coli strain DFS.1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715