Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LPC09_RS22950 Genome accession   NZ_CP088245
Coordinates   4575826..4576455 (+) Length   209 a.a.
NCBI ID   WP_231308481.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4570826..4581455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS22935 (LPC09_22935) - 4571768..4572793 (-) 1026 WP_231308478.1 LacI family DNA-binding transcriptional regulator -
  LPC09_RS22940 (LPC09_22940) - 4573479..4574879 (-) 1401 WP_231308479.1 IS110 family transposase -
  LPC09_RS22945 (LPC09_22945) - 4575011..4575439 (-) 429 WP_231308480.1 hypothetical protein -
  LPC09_RS22950 (LPC09_22950) comA 4575826..4576455 (+) 630 WP_231308481.1 response regulator transcription factor Regulator
  LPC09_RS22955 (LPC09_22955) - 4576504..4578783 (-) 2280 WP_231308482.1 ATP-binding protein -
  LPC09_RS22960 (LPC09_22960) - 4578828..4579001 (-) 174 WP_231308483.1 hypothetical protein -
  LPC09_RS22965 (LPC09_22965) - 4579017..4579178 (-) 162 WP_231308484.1 hypothetical protein -
  LPC09_RS22970 (LPC09_22970) - 4579349..4579864 (-) 516 WP_231308485.1 hypothetical protein -
  LPC09_RS22975 (LPC09_22975) - 4580125..4580427 (+) 303 WP_098797844.1 helix-turn-helix domain-containing protein -
  LPC09_RS22980 (LPC09_22980) - 4580472..4581341 (+) 870 WP_231308486.1 IS3 family transposase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23507.13 Da        Isoelectric Point: 4.8482

>NTDB_id=633492 LPC09_RS22950 WP_231308481.1 4575826..4576455(+) (comA) [Metabacillus sp. B2-18]
MVNVLVVDDHIAVTEGTKAILETCDDIFVDTLSPPFSIDLIKDKDYSKYDVILMDINLGLEQNGIEVSKLILKDQPNCKI
IIYTGYDIEDYFVEAVKNGIYGAINKNTTKQNIVTYINHVLNGNIVMSLELCKRSLKTSTKPPREKVGYTERERKILELL
GEGLTNQEIADKIFVSKRTVEYSITEIFNKLNVSSRAEAVLIAKSEGLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=633492 LPC09_RS22950 WP_231308481.1 4575826..4576455(+) (comA) [Metabacillus sp. B2-18]
ATGGTTAATGTATTAGTTGTAGATGATCATATTGCAGTAACAGAAGGTACAAAGGCAATATTAGAAACGTGTGATGACAT
CTTTGTTGATACTTTGTCACCCCCTTTTTCTATCGATTTGATTAAGGACAAAGATTACTCAAAGTATGATGTTATCTTGA
TGGATATAAATTTAGGCCTGGAACAAAACGGAATTGAAGTGTCCAAACTCATTCTGAAGGATCAGCCTAATTGCAAAATC
ATTATTTACACGGGATATGATATTGAGGATTATTTTGTAGAAGCTGTAAAGAATGGGATTTACGGAGCTATTAATAAAAA
TACTACAAAACAAAATATTGTTACTTATATTAACCATGTTCTTAATGGGAATATTGTGATGTCATTAGAGCTTTGTAAAA
GATCTCTTAAGACCTCCACAAAGCCACCAAGAGAGAAGGTTGGTTATACAGAACGCGAGCGTAAAATCCTAGAATTATTA
GGAGAAGGTCTAACGAATCAGGAGATTGCAGATAAAATTTTCGTGAGTAAACGAACTGTTGAGTATTCCATTACTGAGAT
ATTTAATAAGTTGAATGTATCGTCACGAGCAGAAGCCGTTTTAATCGCAAAATCTGAAGGACTCTTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-203)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

54.673

100

0.56