Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LPC09_RS16915 Genome accession   NZ_CP088245
Coordinates   3325612..3327312 (-) Length   566 a.a.
NCBI ID   WP_098796039.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3320612..3332312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS16890 (LPC09_16890) - 3320988..3321134 (+) 147 WP_098796044.1 YycC family protein -
  LPC09_RS16895 (LPC09_16895) - 3321355..3322329 (+) 975 WP_098796043.1 ketoacyl-ACP synthase III -
  LPC09_RS16900 (LPC09_16900) - 3322416..3322934 (+) 519 WP_098796042.1 hypothetical protein -
  LPC09_RS16905 (LPC09_16905) spo0A 3323005..3323796 (-) 792 WP_098796041.1 sporulation transcription factor Spo0A -
  LPC09_RS16910 (LPC09_16910) spoIVB 3324102..3325397 (-) 1296 WP_098796040.1 SpoIVB peptidase -
  LPC09_RS16915 (LPC09_16915) recN 3325612..3327312 (-) 1701 WP_098796039.1 DNA repair protein RecN Machinery gene
  LPC09_RS16920 (LPC09_16920) argR 3327369..3327818 (-) 450 WP_098796038.1 transcriptional regulator ArgR -
  LPC09_RS16925 (LPC09_16925) - 3328053..3328898 (-) 846 WP_098796037.1 TlyA family RNA methyltransferase -
  LPC09_RS16930 (LPC09_16930) dxs 3328895..3330796 (-) 1902 WP_231307861.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LPC09_RS16935 (LPC09_16935) - 3331096..3331980 (-) 885 WP_231307862.1 farnesyl diphosphate synthase -
  LPC09_RS16940 (LPC09_16940) - 3331977..3332231 (-) 255 WP_098796035.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63859.53 Da        Isoelectric Point: 4.9009

>NTDB_id=633472 LPC09_RS16915 WP_098796039.1 3325612..3327312(-) (recN) [Metabacillus sp. B2-18]
MLAELSIKNFAIIESLTISFERGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEALFLLDGTNHPVYQR
CEEFGIDVSDGMIILRRDMSSTGKSICRINGKLVTIAVLREVGQLLVDIHGQHDNQELMNEENHLSLLDQYGGQEVKDAL
EAYLDVYRHYDGLKKKITQLSENEQEMAHRLDLLQFQLDEIEKADLQPKEDELLQEEKNQISNYEKIYDALKNGYNSLHG
EQKGLDWIGLAMSQLENVGQINSTLKELSETVSNAFYMLEDISYQLRNELESLEFDPGRLNYVEGRLNEINTLKRKYGQS
VEEILTYSAKIEEEIDTIQNKDSHLTKLQKELLSVTEDLSIEAKNLSMIRQKHAKLLVNEIHQELKELYMEKTSFDVNMK
EKRSNVNEIRYTSTGAEEIEFYISTNPGEPLKPLNKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSNGSQVLCITHLPQVAAMADTHLYIAKETKSGRTKTSVKPLVEDEKVKEIGRMIAGVEVTELSKEHAKELLLL
ASSAKR

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=633472 LPC09_RS16915 WP_098796039.1 3325612..3327312(-) (recN) [Metabacillus sp. B2-18]
TTGTTAGCGGAATTATCAATAAAAAACTTTGCAATTATCGAATCTTTAACCATTTCTTTTGAGAGAGGACTAACCGTATT
AACTGGTGAAACCGGCGCTGGAAAGTCAATAATCATTGATGCAATCCATTTATTAGCCGGAGCAAGAGGATCTTCTGAAT
TTGTTCGGTATGGAGAAAAACGAGCAGAATTAGAGGCATTATTTTTATTAGATGGTACAAACCATCCTGTTTATCAAAGA
TGTGAAGAGTTCGGAATTGATGTTAGTGATGGAATGATTATTCTTAGAAGAGACATGTCTTCAACGGGGAAAAGTATTTG
CCGTATTAATGGAAAGTTAGTAACTATTGCTGTTTTAAGAGAAGTTGGTCAGCTTTTGGTTGATATCCACGGGCAGCATG
ATAATCAAGAGCTTATGAACGAAGAAAATCACCTTTCGTTACTAGATCAATATGGTGGGCAAGAAGTAAAAGATGCACTA
GAAGCTTATTTAGATGTTTATCGACATTATGATGGACTTAAAAAGAAAATCACCCAGCTTTCTGAAAATGAACAGGAAAT
GGCGCATCGGCTTGACTTACTACAATTTCAATTAGACGAAATTGAAAAGGCGGATTTACAGCCAAAAGAGGACGAGCTAT
TACAAGAAGAGAAAAATCAAATATCCAACTATGAAAAGATATATGACGCTCTAAAAAATGGCTATAATTCTCTTCATGGA
GAACAAAAGGGGTTAGATTGGATAGGGCTTGCCATGAGTCAGCTTGAGAATGTGGGCCAAATTAATTCTACATTAAAGGA
ACTTTCAGAGACCGTTTCAAACGCTTTTTATATGTTGGAAGACATCTCGTATCAGCTAAGAAATGAATTGGAGTCTCTTG
AATTTGATCCTGGACGACTGAATTACGTTGAGGGTAGATTGAATGAAATTAACACTTTAAAGAGAAAATATGGTCAATCC
GTTGAAGAGATTTTGACATATTCAGCTAAGATTGAAGAGGAAATTGATACGATTCAAAATAAAGATAGCCATTTAACTAA
ATTACAAAAAGAGCTTCTATCAGTTACAGAAGATTTATCCATTGAGGCGAAAAACCTTTCAATGATTAGGCAGAAGCATG
CTAAGTTGTTAGTTAATGAAATTCATCAAGAGCTTAAAGAGCTATATATGGAGAAAACAAGCTTTGATGTTAATATGAAA
GAAAAAAGAAGCAATGTTAACGAGATAAGATATACTTCTACAGGTGCAGAAGAAATTGAATTTTATATTTCGACTAACCC
TGGTGAGCCATTAAAACCATTAAATAAAACAGCATCAGGTGGGGAACTTTCACGGATTATGCTTGCGATGAAGAGTATTT
TTTCACAGCACCAAGGAATTACTTCAATTATATTTGATGAAGTTGATACAGGTGTTAGTGGGCGTGTTGCTCAAGCTATT
GCTGAAAAAATTTACCGAGTTTCTAACGGTTCTCAAGTTCTATGTATTACACATCTTCCACAGGTCGCTGCGATGGCTGA
TACACACTTATATATTGCAAAAGAAACAAAATCGGGTCGAACCAAAACAAGTGTTAAGCCATTGGTAGAAGACGAGAAAG
TGAAAGAAATCGGTCGAATGATTGCCGGGGTGGAAGTAACAGAGCTTTCAAAGGAACATGCAAAAGAACTTCTGTTACTT
GCTTCTTCGGCAAAACGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

67.247

100

0.682