Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LPC09_RS04745 Genome accession   NZ_CP088245
Coordinates   905677..906630 (+) Length   317 a.a.
NCBI ID   WP_121664720.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 900677..911630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS04720 (LPC09_04720) - 902304..903112 (-) 809 Protein_835 undecaprenyl-diphosphate phosphatase -
  LPC09_RS04725 (LPC09_04725) - 903252..903431 (+) 180 WP_098798716.1 YjzC family protein -
  LPC09_RS04730 (LPC09_04730) - 903501..903692 (-) 192 WP_098798715.1 DUF2929 family protein -
  LPC09_RS04735 (LPC09_04735) - 903954..904688 (+) 735 WP_231309125.1 hypothetical protein -
  LPC09_RS04740 (LPC09_04740) - 904813..905604 (+) 792 WP_231309126.1 hypothetical protein -
  LPC09_RS04745 (LPC09_04745) med 905677..906630 (+) 954 WP_121664720.1 BMP family ABC transporter substrate-binding protein Regulator
  LPC09_RS04750 (LPC09_04750) comZ 906700..906882 (+) 183 WP_098798711.1 ComZ family protein Regulator
  LPC09_RS04755 (LPC09_04755) - 906919..907230 (-) 312 WP_231309128.1 hypothetical protein -
  LPC09_RS04760 (LPC09_04760) - 907448..908380 (+) 933 WP_231309129.1 beta-ketoacyl-ACP synthase III -
  LPC09_RS04765 (LPC09_04765) fabF 908486..909727 (+) 1242 WP_231309130.1 beta-ketoacyl-ACP synthase II -
  LPC09_RS04770 (LPC09_04770) - 909854..910621 (+) 768 WP_231309131.1 DUF2268 domain-containing protein -
  LPC09_RS04775 (LPC09_04775) - 910793..911542 (+) 750 WP_231309132.1 YjbA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35126.48 Da        Isoelectric Point: 3.9165

>NTDB_id=633457 LPC09_RS04745 WP_121664720.1 905677..906630(+) (med) [Metabacillus sp. B2-18]
MYIKFGLVLILLFSLFGCGQPVASGKLEKVGLLVPDTIDDKVWGTKGYKGLLKIQSELGVDVFYKEGMNDEFSIRSAIDE
FQEKDVNLIFGHGSEYAAFFNTICKDYPDIHFVLFNGEASGENVTSLNFESHAMGFFGGMVAGEMTNNDKVGVLAAFEWQ
PEIDGFFEGAYFQNENVNVDIQYVQDWNDVTTAMTLLDAMIAEGVDIVYVAGDGYNISVIERLKEEGLYAIGFVSDQSDL
GKGTVLTSTVQHVDVLYELVAKSFDSGELESGELFYDFQDGVISLGKFSPLVEKNFQTDLQESIEEYKESGLLPNQL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=633457 LPC09_RS04745 WP_121664720.1 905677..906630(+) (med) [Metabacillus sp. B2-18]
ATGTACATAAAGTTTGGTTTAGTCCTTATCCTTCTTTTTTCGCTTTTTGGTTGTGGACAACCCGTAGCTTCAGGAAAACT
GGAGAAAGTAGGTTTACTTGTACCCGATACAATAGATGATAAAGTATGGGGAACAAAAGGGTACAAGGGGCTGCTGAAGA
TTCAGTCTGAACTAGGCGTGGATGTTTTTTATAAAGAAGGAATGAATGATGAATTTAGTATTCGTTCTGCTATTGACGAA
TTTCAAGAAAAGGATGTTAATCTGATTTTTGGTCATGGTAGTGAATATGCGGCTTTTTTCAATACGATTTGTAAAGATTA
TCCTGATATTCATTTCGTTTTATTCAATGGGGAAGCTTCTGGAGAAAATGTCACAAGCTTAAACTTTGAATCACATGCAA
TGGGCTTTTTTGGTGGAATGGTTGCTGGTGAAATGACGAATAATGATAAGGTTGGTGTATTAGCCGCATTTGAATGGCAG
CCTGAAATTGATGGTTTTTTTGAAGGGGCATATTTCCAAAATGAAAATGTAAATGTTGATATTCAATATGTACAAGATTG
GAATGATGTCACGACAGCTATGACCCTGTTGGATGCAATGATTGCTGAAGGAGTAGACATTGTTTATGTTGCAGGAGATG
GTTATAATATTTCCGTCATTGAGCGTCTAAAGGAAGAGGGCTTGTATGCAATTGGATTTGTATCCGATCAATCTGATTTA
GGGAAAGGAACAGTTCTCACAAGTACAGTTCAACATGTGGATGTTTTATATGAGCTTGTTGCAAAAAGTTTTGATAGCGG
AGAACTAGAAAGTGGAGAATTATTTTATGATTTCCAAGATGGTGTTATTTCACTGGGGAAATTTAGCCCCTTAGTGGAAA
AAAACTTTCAAACAGATCTTCAAGAATCCATTGAGGAATATAAGGAAAGTGGGCTTTTACCTAATCAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.866

99.054

0.524