Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LPC09_RS03330 Genome accession   NZ_CP088245
Coordinates   640885..641838 (+) Length   317 a.a.
NCBI ID   WP_231308975.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 635885..646838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS03315 (LPC09_03315) - 637389..639047 (+) 1659 WP_231308972.1 PAS domain-containing protein -
  LPC09_RS03320 (LPC09_03320) - 639030..639659 (-) 630 WP_231308973.1 hypothetical protein -
  LPC09_RS03325 (LPC09_03325) - 639685..640341 (-) 657 WP_231308974.1 cobalamin-dependent protein -
  LPC09_RS03330 (LPC09_03330) ceuB 640885..641838 (+) 954 WP_231308975.1 ABC transporter permease Machinery gene
  LPC09_RS03335 (LPC09_03335) - 641828..642781 (+) 954 WP_231308976.1 iron chelate uptake ABC transporter family permease subunit -
  LPC09_RS03340 (LPC09_03340) - 642778..643545 (+) 768 WP_231308977.1 ABC transporter ATP-binding protein -
  LPC09_RS03345 (LPC09_03345) - 643763..644812 (+) 1050 WP_231308978.1 siderophore ABC transporter substrate-binding protein -
  LPC09_RS03350 (LPC09_03350) - 644957..645538 (+) 582 WP_231308979.1 NAD(P)H-dependent oxidoreductase -
  LPC09_RS03355 (LPC09_03355) - 645581..646213 (+) 633 WP_098798659.1 class D sortase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34694.74 Da        Isoelectric Point: 9.1244

>NTDB_id=633453 LPC09_RS03330 WP_231308975.1 640885..641838(+) (ceuB) [Metabacillus sp. B2-18]
MRLWMLGIAAIVLSFISLFIGAIDITPMDLLNWDSDETHIFLISRVPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAARLGILISMLFFTNVTYTQQVIFSFAFALAGTFVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIISGRYELLYVSIPAIILAYIYANKFTVAGMGEDFAKNLGLSYKLILNIGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=633453 LPC09_RS03330 WP_231308975.1 640885..641838(+) (ceuB) [Metabacillus sp. B2-18]
ATGAGATTATGGATGCTAGGAATTGCAGCTATCGTCCTGTCTTTTATTTCGCTATTCATCGGAGCAATTGATATTACACC
AATGGATTTGCTTAATTGGGATTCAGACGAAACACATATTTTCCTAATAAGCCGAGTTCCACGGTTAATTGCCATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGCTTAATTATGCAGTCTTTAAGTCGAAATAAATTTGTATCACCAACAACTGCT
GGGACATTAGACGCAGCAAGGCTAGGTATTTTAATATCAATGCTATTTTTTACGAATGTAACATACACCCAGCAAGTTAT
TTTTAGTTTTGCTTTTGCATTAGCTGGAACATTCGTATTTATGCAGATTTTGGATCGTATAAAATTTAAAGATGTTATTT
TTGTTCCATTAATCGGGATTATGTATGGGAATATACTATCTTCCATTACAACTTTTTTAGGGTATGAAGCTGATCTGCTT
CAAAACCTCTCTTCCTGGCTCATGGGGAGCTTTACTTTGATTATTTCTGGTCGCTATGAACTTTTATATGTTAGTATTCC
AGCTATTATATTAGCTTACATTTATGCAAATAAATTTACAGTAGCCGGAATGGGAGAAGATTTTGCGAAAAATCTAGGCT
TAAGTTATAAGCTGATTCTAAATATTGGTCTTATTCTTGTTGCAATTATTTCGACAACAGTTGTTCTCACTGTGGGGGTT
ATTCCATTTTTGGGACTAATTGTACCAAATATTGTTTCTCTTTATTTAGGTGATAACTTACGCAAAACAATACCACATAC
CGCGGTATTAGGGGTTGTTTTCCTATTAATATGTGATATTTTAGGGCGGATCATTATTCACCCTTATGAGATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCGATCTTCTTAACGATGCTACTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527