Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LPC09_RS02885 Genome accession   NZ_CP088245
Coordinates   558584..559384 (+) Length   266 a.a.
NCBI ID   WP_231308940.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 559846..561197 558584..559384 flank 462


Gene organization within MGE regions


Location: 558584..561197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS02885 (LPC09_02885) recX 558584..559384 (+) 801 WP_231308940.1 recombination regulator RecX Regulator
  LPC09_RS02890 (LPC09_02890) - 559406..559723 (+) 318 WP_231308941.1 YfhH family protein -
  LPC09_RS02895 (LPC09_02895) - 559846..561197 (+) 1352 WP_176551265.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 31386.90 Da        Isoelectric Point: 5.5438

>NTDB_id=633452 LPC09_RS02885 WP_231308940.1 558584..559384(+) (recX) [Metabacillus sp. B2-18]
MAIITKITTQKQSDDRYNIFLDDGTGEKFAFSVDQDILIKHNLQKGKELDEFDIVEIKYGDDRKKAYNKALEFLSYRMRS
VKEVEDYLAKKEYHESVIKEVILKLKEYNYVDDLEFALAYVRTQKQTNGKGPTILTRELVMKGIGQSIIEQVLEEYDQGE
QLEEAIAHAEKLLKKNNKLSTIQLKQKIEQHLLRKGFPYNIISIALEEVDYEQDESEEWLALVKHAEKGKKKYQTEDPYQ
YKMKMKQFLYRKGFAIDLIEKFLNED

Nucleotide


Download         Length: 801 bp        

>NTDB_id=633452 LPC09_RS02885 WP_231308940.1 558584..559384(+) (recX) [Metabacillus sp. B2-18]
ATGGCAATTATTACAAAAATTACAACACAAAAGCAATCTGATGATCGGTATAATATTTTTCTCGATGATGGTACAGGGGA
AAAGTTTGCTTTTAGCGTTGATCAAGACATTCTAATAAAACATAATCTTCAAAAAGGCAAGGAACTAGATGAATTTGATA
TCGTTGAGATAAAATATGGAGATGATAGAAAGAAAGCTTATAATAAAGCATTAGAGTTCCTAAGTTATCGTATGCGATCA
GTTAAAGAAGTAGAGGATTATTTGGCGAAAAAAGAATATCATGAATCGGTAATAAAGGAAGTTATCCTTAAATTAAAAGA
ATATAACTATGTAGATGATTTGGAATTTGCACTAGCCTATGTCCGGACTCAGAAGCAAACCAATGGGAAAGGTCCTACTA
TACTAACCCGTGAATTGGTTATGAAAGGAATTGGACAATCTATAATTGAACAGGTCTTGGAAGAATATGATCAAGGTGAG
CAGCTTGAAGAAGCCATTGCTCATGCTGAAAAGCTCTTGAAAAAAAATAATAAGCTTTCAACCATTCAGCTTAAGCAGAA
AATAGAGCAGCATCTACTAAGAAAAGGATTTCCCTATAACATCATTTCGATTGCGTTAGAGGAAGTCGATTATGAGCAAG
ATGAATCTGAAGAGTGGTTAGCATTAGTTAAGCATGCTGAAAAAGGCAAGAAAAAATATCAAACTGAAGATCCTTATCAA
TACAAAATGAAAATGAAACAGTTTTTATACAGAAAAGGTTTCGCGATAGATCTAATTGAAAAGTTTTTAAATGAAGATTA
A

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

55.263

100

0.553