Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPC09_RS00580 Genome accession   NZ_CP088245
Coordinates   111190..112566 (+) Length   458 a.a.
NCBI ID   WP_231308793.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106190..117566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS00560 (LPC09_00560) - 106386..106847 (+) 462 WP_121664157.1 CtsR family transcriptional regulator -
  LPC09_RS00565 (LPC09_00565) - 106863..107414 (+) 552 WP_231308791.1 UvrB/UvrC motif-containing protein -
  LPC09_RS00570 (LPC09_00570) - 107415..108512 (+) 1098 WP_231308792.1 protein arginine kinase -
  LPC09_RS00575 (LPC09_00575) clpC 108509..110956 (+) 2448 WP_098798351.1 ATP-dependent protease ATP-binding subunit ClpC -
  LPC09_RS00580 (LPC09_00580) radA 111190..112566 (+) 1377 WP_231308793.1 DNA repair protein RadA Machinery gene
  LPC09_RS00585 (LPC09_00585) disA 112567..113646 (+) 1080 WP_098798349.1 DNA integrity scanning diadenylate cyclase DisA -
  LPC09_RS00590 (LPC09_00590) - 113845..114942 (+) 1098 WP_098798348.1 PIN/TRAM domain-containing protein -
  LPC09_RS00595 (LPC09_00595) ispD 115052..115735 (+) 684 WP_231308794.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LPC09_RS00600 (LPC09_00600) ispF 115777..116256 (+) 480 WP_231308795.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49548.99 Da        Isoelectric Point: 8.1546

>NTDB_id=633451 LPC09_RS00580 WP_231308793.1 111190..112566(+) (radA) [Metabacillus sp. B2-18]
MAKAKVKFICQTCGYESPKWMGKCPGCGEWNTMTEEVLKSGSPRRAVFAHSNQTVQKPSPITTIETTQEPRIFTNLKEFN
RVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSSQLADNGHDVLYISGEESVKQTKLRADRLGVKSNKLLVLSETDLSFISK
AIDETNPAFVVVDSIQTVYHSEISSAPGSVSQVRESTAELMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKEAGLEEVQNPSEIFLEERSKGAAGSTVVASMEGTRSVLVEIQALISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPPKPTDVIIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAVIPHANIGGWNPPDDIEIIGVKNVAEALQKTLGGS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=633451 LPC09_RS00580 WP_231308793.1 111190..112566(+) (radA) [Metabacillus sp. B2-18]
ATGGCAAAAGCAAAGGTAAAGTTTATTTGTCAAACCTGTGGATATGAATCACCGAAGTGGATGGGAAAATGCCCAGGATG
TGGTGAATGGAATACAATGACAGAAGAAGTATTAAAGTCTGGGTCACCTCGAAGGGCTGTTTTTGCTCATTCCAATCAAA
CGGTACAAAAACCCTCGCCGATCACAACAATTGAAACAACCCAAGAACCAAGAATATTTACAAACCTTAAAGAATTTAAC
CGTGTACTCGGAAGTGGTATTGTGAAGGGATCTTTAGTTTTAATTGGTGGTGACCCTGGTATTGGGAAATCAACACTGTT
ATTACAAGTATCCTCTCAATTAGCTGATAACGGTCATGATGTTTTATATATATCTGGTGAAGAATCAGTTAAGCAAACGA
AATTAAGGGCAGATCGCTTAGGGGTAAAATCTAATAAATTATTAGTTTTATCTGAAACAGATTTAAGCTTTATTTCAAAA
GCAATCGACGAAACAAACCCAGCCTTTGTAGTGGTCGATTCGATTCAAACTGTTTATCATAGTGAAATAAGCTCTGCTCC
AGGTAGTGTGTCTCAAGTAAGAGAATCAACGGCTGAATTAATGAGAATAGCCAAAACAAAGGGAATTGCGGTATTCATTG
TTGGTCATGTAACGAAAGAGGGTTCAATTGCAGGTCCAAGGCTTTTAGAGCATATGGTTGATACTGTCCTCTATTTTGAA
GGAGAAAGGCATCATACGTATCGAATATTACGTGCTGTAAAAAACCGTTTTGGATCCACAAATGAAATGGGAATTTTTGA
GATGAAAGAAGCTGGTTTAGAAGAGGTGCAAAATCCATCAGAGATTTTTCTAGAAGAGAGGTCTAAGGGTGCAGCAGGTT
CAACAGTTGTTGCCTCGATGGAAGGTACCAGATCAGTGCTTGTTGAAATTCAGGCTCTTATCTCTCCGACCAGTTTTGGA
AATCCAAGGAGAATGGCAACTGGAATAGATCATAATCGAGTGCCATTGTTAATGGCTGTTTTAGAGAAACGTGTTGGTCT
TCTTTTGCAAAACCAGGATGCATATCTAAAGGTTGCCGGAGGCGTAAAGCTTGATGAACCTGCTATTGATTTAGCTGTTG
CTGTTAGTATTGCATCTAGTTTTAAGGATGCACCACCAAAACCAACTGACGTTATTATCGGAGAAGTTGGGTTAACAGGT
GAGGTTCGTAGAGTGTCGAGAATTGAACAAAGAGTGATTGAGGCTGCAAAGCTAGGTTTTAAGAGGGCGGTCATTCCACA
TGCAAATATAGGCGGTTGGAATCCACCAGATGATATAGAAATTATAGGAGTAAAAAATGTAGCAGAGGCCCTCCAAAAAA
CATTAGGGGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

80.786

100

0.808
  radA Streptococcus mitis NCTC 12261

60.659

99.345

0.603
  radA Streptococcus mitis SK321

60.659

99.345

0.603
  radA Streptococcus pneumoniae Rx1

60.44

99.345

0.6
  radA Streptococcus pneumoniae D39

60.44

99.345

0.6
  radA Streptococcus pneumoniae R6

60.44

99.345

0.6
  radA Streptococcus pneumoniae TIGR4

60.44

99.345

0.6