Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   STP1_RS02530 Genome accession   NC_022737
Coordinates   543942..544658 (+) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus pasteuri SP1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 538942..549658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STP1_RS02500 (STP1_0477) - 539424..540050 (+) 627 WP_002466261.1 nitroreductase family protein -
  STP1_RS02505 (STP1_0478) - 540167..540952 (+) 786 WP_023373235.1 carbon-nitrogen family hydrolase -
  STP1_RS02510 - 541366..541443 (-) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  STP1_RS12510 - 541510..541587 (-) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  STP1_RS02515 (STP1_0479) - 541904..542467 (+) 564 WP_041613618.1 accessory gene regulator AgrB -
  STP1_RS02520 (STP1_0480) - 542472..542612 (+) 141 WP_023373239.1 cyclic lactone autoinducer peptide -
  STP1_RS02525 (STP1_0481) - 542640..543929 (+) 1290 WP_023373241.1 GHKL domain-containing protein -
  STP1_RS02530 (STP1_0482) agrA 543942..544658 (+) 717 WP_002466277.1 LytTR family DNA-binding domain-containing protein Regulator
  STP1_RS02535 (STP1_0483) - 544717..545673 (-) 957 WP_023373242.1 carbohydrate kinase -
  STP1_RS02540 (STP1_0484) - 545670..547154 (-) 1485 WP_023373244.1 sucrose-6-phosphate hydrolase -
  STP1_RS02545 (STP1_0485) - 547456..548406 (-) 951 WP_023373246.1 LacI family DNA-binding transcriptional regulator -
  STP1_RS02550 (STP1_0486) - 548546..548770 (-) 225 WP_002452012.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=63341 STP1_RS02530 WP_002466277.1 543942..544658(+) (agrA) [Staphylococcus pasteuri SP1]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=63341 STP1_RS02530 WP_002466277.1 543942..544658(+) (agrA) [Staphylococcus pasteuri SP1]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAACGACATCG
GTTGTTATTTCTTAGATATTCAACTTGAAGCTGATATTAATGGCATTAAATTAGGTAGTGAAATTCGAAAACATGATCCC
GTAGGTAATATCATTTTTGTAACAAGTCATAGTGAATTAACATATCTCACTTTCGTTTATAAAGTGGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTCAAATTAT
TATCTAAAGAAAGTAATGTAGAAACAATTGAGTTAAAGCGTGGTAGTAATTCAGTTTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACACCGATTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGATCGTTTCTTTAGATGCCATAATAGCTTTGTGATTAATAGGAGAAATATTGAGTCCATTG
ATTCTAAAGAACGCATTGTCTATTTTAAAAATAAAGAGCACTGTTATGCATCAGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937

Multiple sequence alignment