Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   N6J21_RS30805 Genome accession   NZ_CP104794
Coordinates   6859196..6860230 (+) Length   344 a.a.
NCBI ID   WP_093718749.1    Uniprot ID   -
Organism   Streptomyces sp. FZ201     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6854196..6865230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS30790 - 6854836..6855678 (-) 843 WP_093718672.1 helix-turn-helix transcriptional regulator -
  N6J21_RS30795 - 6855866..6857533 (+) 1668 WP_093718671.1 AMP-binding protein -
  N6J21_RS30800 - 6857530..6859119 (+) 1590 WP_261719799.1 AMP-binding protein -
  N6J21_RS30805 cytR 6859196..6860230 (+) 1035 WP_093718749.1 LacI family DNA-binding transcriptional regulator Regulator
  N6J21_RS30810 - 6860497..6861618 (+) 1122 WP_093718669.1 cellulose binding domain-containing protein -
  N6J21_RS30815 - 6861728..6862807 (+) 1080 WP_093718668.1 lytic polysaccharide monooxygenase -
  N6J21_RS30820 - 6863089..6863787 (-) 699 WP_093718667.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37116.31 Da        Isoelectric Point: 7.3643

>NTDB_id=633372 N6J21_RS30805 WP_093718749.1 6859196..6860230(+) (cytR) [Streptomyces sp. FZ201]
MAKRRPGPAPTLEQVAALAGVGRGTVSRVINNEPGVKESTRRAVRKAVAELGYVPNLAARTLAGRRADAVALVMTERDWR
LFGEPFFSETVTAVSDALSDTDVQLLLTLVRTDAERQRFVEYARGGRVDGVLLMSVRADDRLPDMLADAGLPTVLLGRRS
GDERVTYVDADNAGGAREAVGHLVRGGRRAIAAITGPLDMYVARCRLRGYRQALAEAGLPDEPSLTVEGDFSEASGRRAT
SELLLRHPALDAVFAASDTMAAGALAVLRAAGRRVPEDVAVIGFDDFQLAQHTDPPLTTVRQPLEELGRTMVRLLLDELT
GSGQPEVAWRHVVLRTRLVVRESA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=633372 N6J21_RS30805 WP_093718749.1 6859196..6860230(+) (cytR) [Streptomyces sp. FZ201]
ATGGCGAAACGGCGGCCCGGTCCGGCGCCCACGCTGGAGCAGGTGGCGGCGCTCGCCGGGGTCGGCAGGGGCACCGTCTC
CCGCGTCATCAACAACGAGCCGGGCGTGAAGGAGTCGACCCGCCGCGCCGTGCGGAAGGCGGTGGCCGAACTCGGCTACG
TGCCCAACCTGGCGGCCCGCACCCTCGCCGGACGGCGCGCGGACGCCGTGGCGCTGGTGATGACCGAGCGGGACTGGCGG
CTGTTCGGCGAGCCGTTCTTCTCGGAGACGGTCACCGCCGTCTCCGACGCCCTCAGCGACACCGACGTCCAACTGCTGCT
CACGCTCGTGCGCACCGACGCCGAGCGGCAGCGTTTCGTGGAGTACGCGCGCGGCGGCCGGGTCGACGGGGTGCTGCTGA
TGTCGGTGCGCGCCGACGACCGGCTGCCGGACATGCTCGCCGACGCCGGTCTGCCCACCGTGCTGCTGGGCCGCCGCTCC
GGCGACGAACGGGTCACCTACGTGGACGCGGACAACGCGGGCGGCGCCCGGGAGGCCGTCGGTCACCTGGTGCGCGGCGG
TCGGCGCGCGATCGCCGCCATCACCGGACCGCTCGACATGTACGTCGCCCGGTGCCGGCTGCGCGGCTACCGGCAGGCAC
TGGCCGAGGCGGGGCTGCCGGACGAGCCGTCGCTGACCGTCGAGGGGGACTTCTCCGAGGCGAGCGGACGGCGCGCGACG
AGCGAACTCCTGCTGCGGCACCCGGCGTTGGACGCGGTGTTCGCCGCCTCCGACACCATGGCCGCCGGGGCGCTGGCGGT
GCTGCGCGCCGCCGGGCGCCGGGTGCCCGAGGACGTGGCGGTCATCGGCTTCGACGACTTCCAGCTCGCCCAGCACACCG
ACCCGCCGCTGACCACCGTCCGCCAGCCGCTGGAGGAACTCGGCCGCACGATGGTCCGGTTGCTGCTGGATGAACTCACC
GGGTCCGGGCAGCCGGAGGTGGCCTGGCGCCATGTGGTGCTGCGGACGCGGTTGGTGGTGCGGGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.278

98.256

0.366
  cytR Vibrio parahaemolyticus RIMD 2210633

36.686

98.256

0.36