Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N6J21_RS28560 Genome accession   NZ_CP104794
Coordinates   6314915..6315694 (-) Length   259 a.a.
NCBI ID   WP_093720509.1    Uniprot ID   A0ABT7IU83
Organism   Streptomyces sp. FZ201     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6309915..6320694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS28550 - 6311563..6312426 (+) 864 WP_250748451.1 GNAT family N-acetyltransferase -
  N6J21_RS28555 - 6312788..6314773 (+) 1986 WP_261719606.1 ATP-dependent DNA helicase -
  N6J21_RS28560 dinR/lexA 6314915..6315694 (-) 780 WP_093720509.1 transcriptional repressor LexA Regulator
  N6J21_RS28565 nrdR 6316269..6316826 (+) 558 WP_093720508.1 transcriptional regulator NrdR -
  N6J21_RS28570 - 6316992..6319886 (+) 2895 WP_093720507.1 vitamin B12-dependent ribonucleotide reductase -
  N6J21_RS28575 - 6319955..6320488 (-) 534 WP_093720506.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27977.66 Da        Isoelectric Point: 7.0665

>NTDB_id=633366 N6J21_RS28560 WP_093720509.1 6314915..6315694(-) (dinR/lexA) [Streptomyces sp. FZ201]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPDGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=633366 N6J21_RS28560 WP_093720509.1 6314915..6315694(-) (dinR/lexA) [Streptomyces sp. FZ201]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTTGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCCCGACGGACACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCCGACAGCTCCGGACTCA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGCCGCGGCTACCCGCCGTCGATGAGGGAGATC
GGGCAGGCCGTGGGCCTCTCCAGCACCTCCTCGGTCGCGCACCAATTGATGGCACTGGAGCGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTGCGCGGCTCCGACCAGGCCGCCTCCGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCCTATGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCCATCCTCGCGGAGGAATCCGTCGAGGAC
GTCTTCCCTCTCCCCCGGCAGCTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTTCTCCCGCACAACTCCGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375