Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LK774_RS07860 Genome accession   NZ_CP088229
Coordinates   1657588..1658214 (+) Length   208 a.a.
NCBI ID   WP_023332613.1    Uniprot ID   -
Organism   Enterobacter kobei strain Ek72     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652588..1663214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK774_RS07840 (LK774_07850) - 1652986..1654746 (-) 1761 WP_023332610.1 Lon protease family protein -
  LK774_RS07845 (LK774_07855) matP 1654933..1655385 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LK774_RS07850 (LK774_07860) ompA 1655450..1656505 (-) 1056 WP_014883252.1 porin OmpA -
  LK774_RS07855 (LK774_07865) sulA 1656861..1657370 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  LK774_RS07860 (LK774_07870) sxy/tfoX 1657588..1658214 (+) 627 WP_023332613.1 TfoX/Sxy family DNA transformation protein Regulator
  LK774_RS07865 (LK774_07875) yccS 1658171..1660333 (-) 2163 WP_023332614.1 YccS family putative transporter -
  LK774_RS07870 (LK774_07880) - 1660353..1660799 (-) 447 WP_023332615.1 YccF domain-containing protein -
  LK774_RS07875 (LK774_07885) helD 1660923..1662977 (+) 2055 WP_023332616.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23929.54 Da        Isoelectric Point: 9.3304

>NTDB_id=633362 LK774_RS07860 WP_023332613.1 1657588..1658214(+) (sxy/tfoX) [Enterobacter kobei strain Ek72]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDNAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=633362 LK774_RS07860 WP_023332613.1 1657588..1658214(+) (sxy/tfoX) [Enterobacter kobei strain Ek72]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATAACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.65

97.596

0.553