Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   N6J21_RS19270 Genome accession   NZ_CP104794
Coordinates   4311161..4312282 (+) Length   373 a.a.
NCBI ID   WP_261718906.1    Uniprot ID   -
Organism   Streptomyces sp. FZ201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4306161..4317282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS19260 dnaN 4308975..4310105 (+) 1131 WP_093725150.1 DNA polymerase III subunit beta -
  N6J21_RS19265 gnd 4310232..4311107 (+) 876 WP_261718905.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  N6J21_RS19270 recF 4311161..4312282 (+) 1122 WP_261718906.1 DNA replication/repair protein RecF Machinery gene
  N6J21_RS19275 - 4312279..4312809 (+) 531 WP_093725156.1 DciA family protein -
  N6J21_RS19280 gyrB 4313173..4315242 (+) 2070 WP_285434090.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40851.51 Da        Isoelectric Point: 7.2045

>NTDB_id=633337 N6J21_RS19270 WP_261718906.1 4311161..4312282(+) (recF) [Streptomyces sp. FZ201]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAVIRAQVRQGERQ
QLVELELNPGRSNRARINRSSQVRPRDILGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAPGEAQ
TREDLYTQLMAALADVRKQEIERGVTLAGPHRDDLLLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDTRRRERLAELVAPGEQVLVTAAVDDDVPHVLTGARYAVSEGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=633337 N6J21_RS19270 WP_261718906.1 4311161..4312282(+) (recF) [Streptomyces sp. FZ201]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCGCTCGATCCGGGCGTCACCGC
CTTCGTCGGCCCGAACGGCCAGGGCAAGACCAATCTGGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGCG
TCGCCTCCGACGCGCCCCTGGTGCGCATGGGCGCCGAGCGGGCGGTGATCCGCGCCCAGGTCCGCCAGGGCGAACGCCAG
CAGCTGGTGGAGCTGGAGCTGAACCCGGGCCGCTCCAACCGCGCCCGCATCAACCGGTCCTCGCAGGTCAGGCCCCGGGA
CATCCTGGGGATCGTGCGCACGGTGCTGTTCGCACCGGAGGACCTGGCCCTGGTCAAGGGCGACCCCGGTGAGCGGCGCC
GCTTCCTGGACGAGCTGATCACCGCGCGCTCCCCGCGCATGGCGGGCGTGCGCTCCGACTACGACCGGGTCCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCACTCGCCCGGCGCCACGGTGGCCGCTCGATGGACCTGTCCACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGCGGGCGCCGAACTGCTCGCCCAGCGCCTGGACCTGATCGCCGCGCTCCAGCCGCTCGCGG
ACAAGGCCTACGAGCAACTCGCGCCCGGCGGCGGCCCGCTGGCGCTGGAGTACAAGCCGTCGGCCCCCGGTGAGGCCCAG
ACCCGCGAGGACCTGTACACGCAGCTGATGGCGGCGCTGGCGGACGTCCGCAAGCAGGAGATCGAGCGCGGCGTCACCCT
CGCCGGGCCCCACCGGGACGATCTGCTGCTCAAACTCGGCCAGTTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCGCTGGCGCTCCGGCTCGCCTCCTACGACCTGCTGCGCGCCGAGGGCAACGAGCCGGTGCTGGTGCTGGAC
GACGTGTTCGCGGAGCTGGACACCCGGCGCCGGGAGCGGCTGGCCGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTGAC
GGCGGCCGTCGACGACGACGTACCGCATGTGCTGACCGGAGCGCGGTACGCGGTGTCGGAGGGGACGGTGGAGCGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.136

94.906

0.362