Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LQ052_RS03785 Genome accession   NZ_CP088203
Coordinates   849148..850830 (+) Length   560 a.a.
NCBI ID   WP_113845377.1    Uniprot ID   -
Organism   Enterococcus durans strain S8-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844148..855830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ052_RS03755 (LQ052_03755) - 844451..845296 (+) 846 WP_249459953.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  LQ052_RS03760 (LQ052_03760) xseA 845297..846658 (+) 1362 WP_113845375.1 exodeoxyribonuclease VII large subunit -
  LQ052_RS03765 (LQ052_03765) - 846639..846863 (+) 225 WP_081133899.1 exodeoxyribonuclease VII small subunit -
  LQ052_RS03770 (LQ052_03770) - 846863..847747 (+) 885 WP_081133898.1 polyprenyl synthetase family protein -
  LQ052_RS03775 (LQ052_03775) - 847762..848580 (+) 819 WP_113845376.1 TlyA family RNA methyltransferase -
  LQ052_RS03780 (LQ052_03780) argR 848681..849130 (+) 450 WP_005881063.1 arginine repressor -
  LQ052_RS03785 (LQ052_03785) recN 849148..850830 (+) 1683 WP_113845377.1 DNA repair protein RecN Machinery gene
  LQ052_RS03790 (LQ052_03790) - 851012..851128 (-) 117 WP_005881061.1 DUF4044 domain-containing protein -
  LQ052_RS03795 (LQ052_03795) - 851200..852156 (-) 957 WP_081133895.1 magnesium transporter CorA family protein -
  LQ052_RS03800 (LQ052_03800) - 852377..852745 (+) 369 WP_005881059.1 DUF3397 domain-containing protein -
  LQ052_RS03805 (LQ052_03805) mraZ 852918..853349 (+) 432 WP_113846239.1 division/cell wall cluster transcriptional repressor MraZ -
  LQ052_RS03810 (LQ052_03810) rsmH 853369..854328 (+) 960 WP_081133894.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LQ052_RS03815 (LQ052_03815) ftsL 854333..854728 (+) 396 WP_005881053.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63360.75 Da        Isoelectric Point: 4.6662

>NTDB_id=633274 LQ052_RS03785 WP_113845377.1 849148..850830(+) (recN) [Enterococcus durans strain S8-3]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRSSSDYIRQGADKCILEGLFEWPKQDGFSALM
NELGIESDGDNLIVRRDMSLTGKNICRVNGHIVTLANLRKIGSYLVDIQGQNEHQELLQPEAHLVLLDRFGDNEFQRKKK
NYQKEFSRYRELERQVRKIQKNEKSFVQRIDMLHFQQEEIAAAQLEVGEEEQLSEEREKLSNYQKIVDSLASGYSALSGE
ERSSVDNVGLAVAELQSIAHLDNEYEAIFENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
IEAILNYYDDITQELASSDFSEGQLEKMKSELAEKEEKLQKQAVELHEIRKKIAKGLEQSILKELKSLYMENTEFEVRFS
KSDKAQLDMNGFDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISRYSQVLCITHLPQVAAVADYQYYIKKDVIKGRTQTSVAELAPAQREEEIARMLAGSEITPLTMEHAKELLRLAKQD

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=633274 LQ052_RS03785 WP_113845377.1 849148..850830(+) (recN) [Enterococcus durans strain S8-3]
ATGTTACAAGAAATCAGTATTACTAATTTTGCGATTATTCCTGAACTGCGGTTGTCTTTTCATGAGGGAATGACGGCACT
CACAGGTGAAACAGGCGCAGGAAAATCAATTATTATTGATGCTCTTGGGCTGTTGGCAGGAGGAAGAAGCTCAAGTGACT
ATATCCGACAAGGTGCAGATAAGTGTATTCTGGAAGGTTTATTTGAGTGGCCTAAACAAGACGGTTTTTCTGCATTGATG
AATGAGTTAGGAATCGAATCTGATGGAGACAACCTGATTGTTCGAAGAGATATGTCTTTGACAGGGAAAAATATTTGTCG
TGTCAATGGGCACATCGTAACATTAGCTAATCTAAGAAAAATAGGCAGTTATTTGGTAGATATCCAAGGCCAAAATGAAC
ATCAGGAATTGTTACAACCAGAAGCACACTTAGTTTTACTCGATCGTTTTGGCGATAATGAATTTCAGCGTAAGAAGAAA
AATTATCAGAAAGAGTTTTCGCGCTACCGCGAACTTGAACGGCAAGTTCGTAAGATCCAGAAAAATGAAAAATCTTTTGT
CCAACGGATTGACATGCTTCATTTTCAGCAAGAAGAAATCGCTGCGGCACAATTAGAAGTAGGCGAAGAAGAACAGTTAA
GTGAAGAGCGAGAAAAATTAAGTAATTATCAAAAAATAGTGGATAGTTTAGCTAGTGGCTATAGTGCGCTGAGCGGGGAA
GAGCGGAGCAGTGTAGACAATGTAGGATTGGCAGTAGCTGAGCTGCAAAGTATCGCGCACTTGGATAATGAGTACGAGGC
GATTTTTGAAAATGTCCAAAGCGCCTATTATTTATTGCAAGATGCAATCGGTGATATGAGTCGTCAAATCGACTTGCTAG
AGTTAGATGAGAATCGCTTAGAAGAAGTGAATCAACGATTAGAGCTGATCCGTCAATTAAAGCGTAAATATGGGGAATCG
ATCGAAGCCATCTTGAACTATTATGATGATATCACTCAGGAACTAGCCTCTTCCGATTTTTCCGAAGGACAACTTGAAAA
AATGAAAAGTGAACTGGCTGAAAAAGAAGAGAAACTTCAGAAACAGGCAGTAGAATTACATGAGATACGAAAGAAAATCG
CTAAAGGATTAGAGCAATCTATCTTAAAAGAATTAAAAAGTCTTTATATGGAAAATACTGAATTCGAAGTACGCTTTTCA
AAATCTGACAAGGCACAACTAGATATGAATGGATTTGACCAAGTGGAGTTCTACATAACCACGAATCCTGGGGAGCCTTT
GAAACCTTTAGTCAAAGTAGCTTCTGGCGGCGAGCTTTCTCGGATGTTATTAGCATTGAAGACGATCTTTTCTTCTGAGC
AAGGAGTAACTAGTATTATTTTTGATGAAGTAGATACAGGGGTCAGTGGAAGAGTCGCACAAGCAATCGCAGATAAAATC
TCACAAATCTCACGTTATTCACAGGTGTTATGTATTACACATCTTCCTCAAGTAGCAGCCGTGGCTGACTATCAGTATTA
CATTAAAAAAGATGTCATCAAAGGGCGCACTCAAACCTCTGTAGCAGAATTGGCGCCAGCACAGCGTGAAGAAGAAATTG
CACGGATGTTGGCAGGAAGTGAAATCACCCCTTTAACGATGGAACATGCAAAAGAATTACTACGCTTAGCGAAACAAGAC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.301

100

0.504