Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQ044_RS13320 Genome accession   NZ_CP088200
Coordinates   2698367..2699413 (-) Length   348 a.a.
NCBI ID   WP_002354860.1    Uniprot ID   A0AAV3GJZ4
Organism   Enterococcus faecalis strain S39-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2693367..2704413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ044_RS13305 (LQ044_13305) - 2694997..2695383 (-) 387 WP_002359008.1 YlbF family regulator -
  LQ044_RS13310 (LQ044_13310) - 2695457..2696254 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  LQ044_RS13315 (LQ044_13315) rny 2696414..2697970 (-) 1557 WP_002354863.1 ribonuclease Y -
  LQ044_RS13320 (LQ044_13320) recA 2698367..2699413 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  LQ044_RS13325 (LQ044_13325) cinA 2699527..2700771 (-) 1245 WP_002365395.1 competence/damage-inducible protein A Machinery gene
  LQ044_RS13330 (LQ044_13330) - 2700963..2702168 (+) 1206 WP_002367468.1 hypothetical protein -
  LQ044_RS13335 (LQ044_13335) - 2702247..2702876 (-) 630 WP_002354854.1 NAD(P)-dependent oxidoreductase -
  LQ044_RS13340 (LQ044_13340) - 2702935..2703360 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  LQ044_RS13345 (LQ044_13345) - 2703449..2703832 (-) 384 WP_002358999.1 YccF domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37409.63 Da        Isoelectric Point: 4.9076

>NTDB_id=633261 LQ044_RS13320 WP_002354860.1 2698367..2699413(-) (recA) [Enterococcus faecalis strain S39-4]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVSLHAIA
EVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGA
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGRENAKQYMADHPEMMAEVSK
LVRDAYGIGDGSTITEEAEGQEELPLDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=633261 LQ044_RS13320 WP_002354860.1 2698367..2699413(-) (recA) [Enterococcus faecalis strain S39-4]
TTGGCAGATGATCGTAAAGTGGCTTTAGATGCCGCACTGAAAAAAATTGAAAAGAACTTTGGGAAAGGCTCTATTATGAA
ATTAGGCGAAAAAGCTGATCAAAAAATTTCAACCATCCCTAGTGGTTCTTTAGCGTTAGATGTTGCATTGGGCGTAGGTG
GGTATCCACGTGGCCGAATTATTGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACTGTTTCTTTACACGCAATTGCA
GAAGTGCAACGAAATGGTGGAACAGCCGCTTTTATCGATGCTGAGCATGCATTGGATCCTCAATATGCGGAGAAACTAGG
CGTTAACATCGATGAATTACTTTTATCTCAACCAGATACGGGCGAGCAAGGCTTAGAGATTGCCGATGCCTTAGTTTCAA
GTGGTGCGATTGACATCGTTGTTATCGACTCGGTTGCTGCGTTAGTTCCTCGTGCAGAGATTGATGGTGAGATGGGAGCG
AGCCATGTCGGCTTACAAGCTCGACTAATGTCTCAAGCACTACGTAAATTATCAGGCTCAATTAATAAGACAAAAACAAT
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTGATGTTCGGAAATCCTGAAACAACTCCTGGTGGACGTGCAT
TGAAATTCTACGCAACGGTTCGTCTAGAAGTCCGTCGTGCAGAACAGTTAAAACAAGGAACAGACATCGTCGGTAACCGC
ACAAAAATTAAAGTCGTTAAAAACAAAGTGGCGCCACCATTTAAAGTGGCAGAAGTTGATATCATGTATGGCCAAGGTAT
TTCCCAAGAAGGCGAATTACTAGATATGGCTGTGGAAAAAGACCTTATCAGTAAAAGTGGTGCTTGGTATGGCTACAAAG
AAGAACGAATTGGCCAAGGCCGTGAAAATGCCAAACAATACATGGCGGATCATCCTGAAATGATGGCAGAAGTGTCTAAA
TTGGTCCGTGATGCATACGGCATCGGTGACGGTTCAACCATTACAGAAGAAGCAGAAGGTCAAGAAGAATTACCCTTAGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.793

94.253

0.761
  recA Bacillus subtilis subsp. subtilis str. 168

77.039

95.115

0.733
  recA Streptococcus pneumoniae D39

68.333

100

0.707
  recA Streptococcus pneumoniae R6

68.333

100

0.707
  recA Streptococcus pneumoniae TIGR4

68.333

100

0.707
  recA Streptococcus pneumoniae Rx1

68.333

100

0.707
  recA Streptococcus mitis SK321

71.217

96.839

0.69
  recA Streptococcus mitis NCTC 12261

71.217

96.839

0.69
  recA Streptococcus mutans UA159

66.761

100

0.675
  recA Streptococcus pyogenes NZ131

70.695

95.115

0.672
  recA Lactococcus lactis subsp. cremoris KW2

68.06

96.264

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

94.253

0.592
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.006

94.54

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

98.563

0.578
  recA Ralstonia pseudosolanacearum GMI1000

61.28

94.253

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.828

0.575
  recA Vibrio cholerae strain A1552

61.728

93.103

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

93.103

0.575
  recA Acinetobacter baumannii D1279779

61.111

93.103

0.569
  recA Pseudomonas stutzeri DSM 10701

60.991

92.816

0.566
  recA Glaesserella parasuis strain SC1401

58.631

96.552

0.566
  recA Acinetobacter baylyi ADP1

60.494

93.103

0.563
  recA Helicobacter pylori strain NCTC11637

59.202

93.678

0.555
  recA Helicobacter pylori 26695

59.202

93.678

0.555