Detailed information NTG0633260

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N6H17_RS14990
• Genome accession: NZ_CP104788
• Coordinates: 3035064..3036056 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SHP24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3030064..3041056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N6H17_RS14970 (N6H17_14975)	otnK	3030839..3032101 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
N6H17_RS14975 (N6H17_14980)	ygbL	3032098..3032736 (+)	639	WP_001278994.1	aldolase	-
N6H17_RS14980 (N6H17_14985)	ygbM	3032741..3033517 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
N6H17_RS14985 (N6H17_14990)	ygbN	3033606..3034970 (+)	1365	WP_000104459.1	GntP family transporter	-
N6H17_RS14990 (N6H17_14995)	rpoS	3035064..3036056 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N6H17_RS14995 (N6H17_15000)	nlpD	3036119..3037213 (-)	1095	WP_315968048.1	murein hydrolase activator NlpD	-
N6H17_RS15000 (N6H17_15005)	pcm	3037398..3038024 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N6H17_RS15005 (N6H17_15010)	surE	3038018..3038779 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N6H17_RS15010 (N6H17_15015)	truD	3038760..3039809 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
N6H17_RS15015 (N6H17_15020)	ispF	3039806..3040285 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N6H17_RS15020 (N6H17_15025)	ispD	3040285..3040995 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=633260 N6H17_RS14990 WP_000081550.1 3035064..3036056(-) (rpoS) [Escherichia coli strain SHP24]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=633260 N6H17_RS14990 WP_000081550.1 3035064..3036056(-) (rpoS) [Escherichia coli strain SHP24]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715