Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   T15_RS10490 Genome accession   NC_022665
Coordinates   2091333..2092700 (-) Length   455 a.a.
NCBI ID   WP_024383973.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2086333..2097700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS10465 (T15_2095) - 2087097..2088377 (-) 1281 WP_023371703.1 MFS transporter -
  T15_RS10470 (T15_2096) - 2088469..2089128 (-) 660 WP_023371705.1 LiaF transmembrane domain-containing protein -
  T15_RS10475 (T15_2097) - 2089133..2089579 (-) 447 WP_023371707.1 LytTR family DNA-binding domain-containing protein -
  T15_RS10480 (T15_2098) - 2089757..2090515 (-) 759 WP_002939965.1 TIGR00266 family protein -
  T15_RS10485 (T15_2099) - 2090715..2091209 (-) 495 WP_023371709.1 beta-class carbonic anhydrase -
  T15_RS10490 (T15_2100) radA 2091333..2092700 (-) 1368 WP_024383973.1 DNA repair protein RadA Machinery gene
  T15_RS10495 - 2092707..2093239 (-) 533 Protein_2043 histidine phosphatase family protein -
  T15_RS10500 (T15_2104) - 2093246..2093689 (-) 444 WP_023371714.1 dUTP diphosphatase -
  T15_RS10505 (T15_2105) - 2093791..2095575 (-) 1785 WP_023371716.1 ABC transporter ATP-binding protein -
  T15_RS10510 (T15_2106) - 2095576..2097282 (-) 1707 WP_023371717.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49872.37 Da        Isoelectric Point: 5.8779

>NTDB_id=63324 T15_RS10490 WP_024383973.1 2091333..2092700(-) (radA) [Streptococcus suis T15]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLDEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=63324 T15_RS10490 WP_024383973.1 2091333..2092700(-) (radA) [Streptococcus suis T15]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCTAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCGATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGAAGTCTGGTCCTGATCGGAGGTGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACAATTGGCACGGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCCATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTCATCGTCG
GCCACATGACCAAGGAAGGTACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGG
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGTACCCGCCCCATTCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGATTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGTGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment