Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LQ046_RS03550 Genome accession   NZ_CP088198
Coordinates   745185..746858 (+) Length   557 a.a.
NCBI ID   WP_104807301.1    Uniprot ID   -
Organism   Enterococcus faecalis strain S11-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740185..751858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ046_RS03520 (LQ046_03520) - 740436..741281 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  LQ046_RS03525 (LQ046_03525) xseA 741291..742637 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  LQ046_RS03530 (LQ046_03530) - 742639..742869 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  LQ046_RS03535 (LQ046_03535) - 742869..743750 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  LQ046_RS03540 (LQ046_03540) - 743764..744579 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  LQ046_RS03545 (LQ046_03545) - 744718..745167 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  LQ046_RS03550 (LQ046_03550) recN 745185..746858 (+) 1674 WP_104807301.1 DNA repair protein RecN Machinery gene
  LQ046_RS03555 (LQ046_03555) - 746949..747059 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  LQ046_RS03560 (LQ046_03560) - 747127..748092 (-) 966 WP_104807302.1 magnesium transporter CorA family protein -
  LQ046_RS03565 (LQ046_03565) - 748337..748729 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  LQ046_RS03570 (LQ046_03570) mraZ 748963..749448 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  LQ046_RS03575 (LQ046_03575) rsmH 749463..750419 (+) 957 WP_010774092.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  LQ046_RS03580 (LQ046_03580) ftsL 750436..750843 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62657.04 Da        Isoelectric Point: 4.5521

>NTDB_id=633203 LQ046_RS03550 WP_104807301.1 745185..746858(+) (recN) [Enterococcus faecalis strain S11-6]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELTSIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=633203 LQ046_RS03550 WP_104807301.1 745185..746858(+) (recN) [Enterococcus faecalis strain S11-6]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATCCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATTGGAACAAGTATGAATGAACTCACTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCCTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTAGATACAGGAGTCAGTGGCCGTGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCCCAAGTGGCAGCCGTTGCTGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501